Detailed information of TA system TA059467

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): parDE/RelB(antitoxin)
• Location: 1548838..1549450
• Replicon: chromosome
• Accession: NZ_CP013838
• Organism: Streptococcus pyogenes strain MGAS11027

Toxin (Protein)

• Gene name: parE
• Uniprot ID: -
• Locus tag: MGAS11027_RS07625
• Protein ID: WP_002994716.1
• Coordinates: 1549115..1549450 (+)
• Length: 112 a.a.

Antitoxin (Protein)

• Gene name: parD
• Uniprot ID: Q5X9X9
• Locus tag: MGAS11027_RS07620
• Protein ID: WP_002988079.1
• Coordinates: 1548838..1549125 (+)
• Length: 96 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
MGAS11027_RS07595	1544017..1545000	-	984	WP_031488719.1	tagatose-bisphosphate aldolase	-
MGAS11027_RS07600	1545004..1545933	-	930	WP_031488720.1	tagatose-6-phosphate kinase	-
MGAS11027_RS07605	1545981..1546496	-	516	WP_002991700.1	galactose-6-phosphate isomerase subunit LacB	-
MGAS11027_RS07610	1546531..1546959	-	429	WP_014635709.1	galactose-6-phosphate isomerase subunit LacA	-
MGAS11027_RS07615	1547404..1548177	+	774	WP_002982738.1	DeoR/GlpR family DNA-binding transcription regulator	-
MGAS11027_RS07620	1548838..1549125	+	288	WP_002988079.1	DNA-damage-inducible protein J	Antitoxin
MGAS11027_RS07625	1549115..1549450	+	336	WP_002994716.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
MGAS11027_RS09345	1549602..1550072	+	471	WP_021733374.1	site-specific integrase	-
MGAS11027_RS09350	1550035..1550583	+	549	WP_180372715.1	site-specific integrase	-
MGAS11027_RS07635	1550715..1551107	-	393	WP_002982716.1	30S ribosomal protein S9	-
MGAS11027_RS07640	1551128..1551574	-	447	WP_002982710.1	50S ribosomal protein L13	-
MGAS11027_RS07645	1551792..1551998	-	207	WP_002982695.1	helix-turn-helix transcriptional regulator	-
MGAS11027_RS07650	1551995..1552501	-	507	WP_002988070.1	hypothetical protein	-
MGAS11027_RS07655	1552637..1553497	-	861	WP_011529009.1	DegV family protein	-
MGAS11027_RS07660	1553594..1554112	-	519	WP_002982682.1	NYN domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (7-104)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 112 a.a.
• Molecular weight: 13154.89 Da
• Isoelectric Point: 5.6157

>T59467 WP_002994716.1 NZ_CP013838:1549115-1549450 [Streptococcus pyogenes]
MDYKKYQIIYAPDVLEKLKEIRDYISQNYSSTSGQHKMEQIISDIEKLEVFPEVGFDADEKYGSKISHYHSTKGYTLSKD
YIVLYHIEGEENRVVIDYLLPTRSDYIKLFK

Nucleotide

• Length: 336 bp

>T59467 NZ_CP013838:1549115-1549450 [Streptococcus pyogenes]
TTGGACTATAAGAAATATCAGATTATCTATGCTCCTGATGTTTTAGAGAAGCTAAAAGAAATTCGTGATTATATTTCTCA
AAACTATTCCTCAACATCAGGTCAGCATAAAATGGAGCAAATCATTAGCGACATAGAAAAACTCGAGGTTTTCCCAGAAG
TTGGTTTTGATGCTGATGAAAAATATGGTTCAAAAATCAGCCATTATCACAGCACTAAAGGTTACACCTTAAGTAAAGAT
TATATTGTCCTATACCATATCGAGGGGGAAGAAAATAGGGTCGTTATTGATTACTTGCTTCCTACTCGAAGCGACTATAT
AAAGTTATTCAAATAA

Antitoxin

Protein

• Length: 96 a.a.
• Molecular weight: 10934.56 Da
• Isoelectric Point: 5.2318

>AT59467 WP_002988079.1 NZ_CP013838:1548838-1549125 [Streptococcus pyogenes]
MTTVKKNRAVTFQANKELVSEAMTVLNKKNLTLSSALRLFLQNVVVTNEVDLLTEEELEKEKLFKQFQAEINKNIEDVRQ
GKFYTSEEVRAELGL

Nucleotide

• Length: 288 bp

>AT59467 NZ_CP013838:1548838-1549125 [Streptococcus pyogenes]
ATGACTACAGTAAAAAAAAACAGAGCGGTTACCTTTCAAGCTAATAAAGAATTGGTAAGCGAAGCAATGACAGTATTAAA
CAAAAAAAATTTAACCTTATCATCTGCTTTAAGATTATTCCTACAAAATGTCGTTGTCACAAACGAGGTTGACTTATTGA
CGGAAGAGGAGTTAGAGAAAGAAAAACTTTTCAAGCAATTTCAAGCTGAAATCAACAAAAATATTGAGGATGTTCGTCAA
GGGAAGTTTTATACCTCTGAAGAAGTGAGGGCTGAACTTGGACTATAA

Structures

Antitoxin

• AlphaFold DB: A0A4U7GX94