Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 161408..161939 Replicon plasmid p1PS8
Accession NZ_CP013792
Organism Piscirickettsia salmonis strain AY6297B

Toxin (Protein)


Gene name relE Uniprot ID A0A7U4YYE1
Locus tag AVI55_RS17080 Protein ID WP_027243212.1
Coordinates 161652..161939 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A1L6TI86
Locus tag AVI55_RS17075 Protein ID WP_027243211.1
Coordinates 161408..161662 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AVI55_RS17045 156494..156856 + 363 WP_027242596.1 hypothetical protein -
AVI55_RS17050 156896..157405 + 510 WP_027242595.1 hypothetical protein -
AVI55_RS17055 157637..158617 + 981 WP_144420849.1 hypothetical protein -
AVI55_RS17060 158699..159043 - 345 Protein_208 DDE-type integrase/transposase/recombinase -
AVI55_RS17065 159083..159955 - 873 WP_069971702.1 IS5 family transposase -
AVI55_RS17070 160037..161014 + 978 WP_036771347.1 IS5 family transposase -
AVI55_RS19240 161029..161190 + 162 WP_155046636.1 hypothetical protein -
AVI55_RS17075 161408..161662 + 255 WP_027243211.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
AVI55_RS17080 161652..161939 + 288 WP_027243212.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
AVI55_RS17085 161946..162407 - 462 Protein_214 tail assembly protein -
AVI55_RS17090 162434..163261 - 828 WP_069971703.1 IS5 family transposase -
AVI55_RS17095 163265..164242 - 978 WP_036771347.1 IS5 family transposase -
AVI55_RS17100 164350..164841 - 492 WP_069971704.1 DUF1561 family protein -
AVI55_RS17105 164923..165900 + 978 WP_036771347.1 IS5 family transposase -
AVI55_RS17110 166028..166756 - 729 WP_036771359.1 IS6 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..188268 188268


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-55)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11063.21 Da        Isoelectric Point: 10.8855

>T59345 WP_027243212.1 NZ_CP013792:161652-161939 [Piscirickettsia salmonis]
MTYKLQFHKEAYKEWKKLNPTTQQQFQKVLKKRLINPHIPSAVCGGDLKGCYKIKLRALGYRLIYTVKKDKVVVQVLAIG
SRNRLEAYRLAASRL

Download         Length: 288 bp

>T59345 NZ_CP013792:161652-161939 [Piscirickettsia salmonis]
ATGACTTATAAATTACAATTTCACAAAGAAGCGTATAAAGAGTGGAAAAAACTAAATCCAACAACTCAGCAACAGTTTCA
AAAAGTTTTGAAAAAACGCTTAATTAACCCACATATCCCATCAGCAGTGTGTGGTGGTGATTTAAAAGGCTGCTATAAAA
TTAAATTAAGAGCGCTCGGTTATCGTTTAATTTATACAGTGAAAAAGGACAAAGTGGTTGTTCAAGTCTTGGCCATTGGT
TCCAGAAACCGCTTAGAAGCGTATCGTTTAGCGGCAAGTCGCCTATAG

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9554.83 Da        Isoelectric Point: 4.3176

>AT59345 WP_027243211.1 NZ_CP013792:161408-161662 [Piscirickettsia salmonis]
MKQLYAQQSVTITELRKSPTSVINEANGEPVVILNHNVPAAYMVPPELFEAMLDSYEDRQLEGIVKKRLHSPDRDFIDVD
VDDL

Download         Length: 255 bp

>AT59345 NZ_CP013792:161408-161662 [Piscirickettsia salmonis]
ATGAAACAGCTCTACGCACAACAGTCGGTAACAATTACAGAACTTAGAAAAAGCCCAACCAGCGTTATCAATGAAGCCAA
CGGCGAACCGGTGGTTATTTTGAATCATAATGTTCCTGCGGCGTACATGGTGCCACCTGAACTTTTTGAAGCCATGCTCG
ACTCGTATGAAGACCGCCAACTTGAAGGCATAGTCAAAAAACGTTTACATTCTCCTGACCGTGACTTTATTGATGTCGAT
GTCGATGACTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4YYE1

Antitoxin

Source ID Structure
AlphaFold DB A0A1L6TI86

References