Detailed information of TA system TA059262

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapC-mazE/PIN(toxin)
• Location: 756669..757461
• Replicon: chromosome
• Accession: NZ_CP013741
• Organism: Mycobacterium tuberculosis variant bovis strain BCG-1 (Russia)

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: P9WFB2
• Locus tag: BOVR_RS03475
• Protein ID: WP_003403386.1
• Coordinates: 757024..757461 (-)
• Length: 146 a.a.

Antitoxin (Protein)

• Gene name: mazE
• Uniprot ID: G0TQE0
• Locus tag: BOVR_RS03470
• Protein ID: WP_003403381.1
• Coordinates: 756669..756914 (-)
• Length: 82 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BOVR_RS03440	751689..753194	+	1506	WP_003403360.1	carotenoid cleavage oxygenase	-
BOVR_RS03445	753275..754285	+	1011	WP_003911248.1	ABC transporter ATP-binding protein	-
BOVR_RS03450	754673..755056	-	384	WP_003403365.1	ribonuclease VapC6	-
BOVR_RS03455	755151..755306	-	156	WP_003403368.1	type II toxin-antitoxin system VapB family antitoxin	-
BOVR_RS03460	755382..756098	-	717	WP_003403371.1	CPBP family intramembrane metalloprotease	-
BOVR_RS03465	756374..756682	-	309	WP_003403376.1	type II toxin-antitoxin system PemK/MazF family toxin	-
BOVR_RS03470	756669..756914	-	246	WP_003403381.1	ribbon-helix-helix protein, CopG family	Antitoxin
BOVR_RS03475	757024..757461	-	438	WP_003403386.1	type II toxin-antitoxin system VapC family toxin	Toxin
BOVR_RS03480	757458..757712	-	255	WP_003911263.1	antitoxin VapB7	-
BOVR_RS03485	757826..760189	+	2364	WP_003403397.1	arylsulfatase AtsD	-
BOVR_RS03490	760252..760578	+	327	WP_003403401.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
BOVR_RS03495	760490..760828	+	339	WP_003403405.1	PIN domain-containing protein	-
BOVR_RS03500	760825..760998	+	174	WP_003898549.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-126)

Antitoxin

• Ribbon-helix-helix protein, CopG (2-38)

Sequences

Toxin

Protein

• Length: 146 a.a.
• Molecular weight: 15245.39 Da
• Isoelectric Point: 5.1865

>T59262 WP_003403386.1 NZ_CP013741:c757461-757024 [Mycobacterium tuberculosis variant bovis]
MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAALGRVTMPNCSRRYSPSIE
ATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAFADLSDVVHVIPDAAGMVSLLGDR

Nucleotide

• Length: 438 bp

>T59262 NZ_CP013741:c757461-757024 [Mycobacterium tuberculosis variant bovis]
ATGATAGTGCTCGACACCACCGTCCTCGTCTATGCCAAAGGCGCCGAGCATCCACTCCGCGATCCCTGCCGCGATCTCGT
CGCGGCAATCGCCGACGAACGCATCGCTGCGACCACCACCGCCGAGGTGATCCAGGAGTTCGTCCACGTACGCGCCCGCC
GGCGCGACCGCAGCGACGCCGCCGCGCTGGGCCGTGTGACTATGCCGAACTGCTCTCGCCGCTACTCACCATCAATCGAG
GCCACCTCGAAGCGCGGCCTGACGCTGTTCGAGACAACGCCAGGGCTTGAAGCCTGCGACGCGGTGCTCGCGGCGGTTGC
CGCAAGCGCCGGCGCGACCGCTCTTGTCTCGGCTGACCCGGCGTTCGCCGATCTGTCGGATGTCGTGCACGTCATTCCCG
ACGCGGCCGGGATGGTCAGCCTGCTCGGCGACCGCTGA

Antitoxin

Protein

• Length: 82 a.a.
• Molecular weight: 9169.01 Da
• Isoelectric Point: 4.2070

>AT59262 WP_003403381.1 NZ_CP013741:c756914-756669 [Mycobacterium tuberculosis variant bovis]
MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENALAEIADWGPAEDWADWADAA
R

Nucleotide

• Length: 246 bp

>AT59262 NZ_CP013741:c756914-756669 [Mycobacterium tuberculosis variant bovis]
ATGCTCAGCTTCCGCGCCGACGACCACGACGTCGACCTGGCCGACGCGTGGGCGCGTCGCCTACACATCGGCCGCTCCGA
GCTGCTGCGCGATGCGCTGCGACGTCACTTGGCCGCGCTGGCCGCGGACCAGGATGTCCAGGCCTACACCGAGCGACCGT
TGACGGACGACGAGAACGCACTGGCTGAGATCGCCGACTGGGGGCCGGCGGAGGACTGGGCCGACTGGGCCGATGCGGCG
CGGTGA

Structures

Toxin

• AlphaFold DB: A0A7U4BSW5

Antitoxin

• AlphaFold DB: G0TQE0