Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) virAT/YafQ(toxin)
Location 30568..31111 Replicon plasmid pOR12Vir
Accession NZ_CP013734
Organism Campylobacter coli strain OR12

Toxin (Protein)


Gene name virT Uniprot ID -
Locus tag ATE51_RS11095 Protein ID WP_053868684.1
Coordinates 30842..31111 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name virA Uniprot ID -
Locus tag ATE51_RS11090 Protein ID WP_058914785.1
Coordinates 30568..30852 (+) Length 95 a.a.

Genomic Context

ATE51_RS11050ATE51_RS11055ATE51_RS11060ATE51_RS11065ATE51_RS11070ATE51_RS11075ATE51_RS11080ATE51_RS11085ATE51_RS11090ATE51_RS11095ATE51_RS11100ATE51_RS11110ATE51_RS11115ATE51_RS11105
Location: 26701..27129 (429 bp)
Type: Others
Protein ID: WP_058914780.1
Location: 27600..27944 (345 bp)
Type: Others
Protein ID: WP_024266121.1
Location: 27958..28263 (306 bp)
Type: Others
Protein ID: WP_058914781.1
Location: 28275..28493 (219 bp)
Type: Others
Protein ID: WP_058914782.1
Location: 28556..28990 (435 bp)
Type: Others
Protein ID: WP_058914783.1
Location: 28977..29408 (432 bp)
Type: Others
Protein ID: WP_058914784.1
Location: 29616..29801 (186 bp)
Type: Others
Protein ID: WP_004306057.1
Location: 29973..30344 (372 bp)
Type: Others
Protein ID: WP_052835040.1
Location: 30568..30852 (285 bp)
Type: Antitoxin
Protein ID: WP_058914785.1
Location: 30842..31111 (270 bp)
Type: Toxin
Protein ID: WP_053868684.1
Location: 31236..31547 (312 bp)
Type: Others
Protein ID: Protein_43
Location: 34248..34550 (303 bp)
Type: Others
Protein ID: WP_058914787.1
Location: 34550..34792 (243 bp)
Type: Others
Protein ID: WP_052835045.1
Location: 31855..33426 (1572 bp)
Type: Others
Protein ID: WP_043012966.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
ATE51_RS11050 (ATE51_05038)26701..27129+429WP_058914780.1hypothetical protein-
ATE51_RS11055 (ATE51_05039)27600..27944+345WP_024266121.1hypothetical protein-
ATE51_RS11060 (ATE51_05040)27958..28263+306WP_058914781.1hypothetical protein-
ATE51_RS11065 (ATE51_05041)28275..28493+219WP_058914782.1hypothetical protein-
ATE51_RS11070 (ATE51_05042)28556..28990+435WP_058914783.1hypothetical protein-
ATE51_RS11075 (ATE51_05043)28977..29408+432WP_058914784.1hypothetical protein-
ATE51_RS11080 (ATE51_05044)29616..29801+186WP_004306057.1hypothetical protein-
ATE51_RS11085 (ATE51_05045)29973..30344+372WP_052835040.1hypothetical protein-
ATE51_RS11090 (ATE51_05046)30568..30852+285WP_058914785.1hypothetical proteinAntitoxin
ATE51_RS11095 (ATE51_05047)30842..31111+270WP_053868684.1type II toxin-antitoxin system YafQ family toxinToxin
ATE51_RS11100 (ATE51_05048)31236..31547+312Protein_43hypothetical protein-
ATE51_RS11105 (ATE51_05049)31855..33426-1572WP_043012966.1relaxase/mobilization nuclease domain-containing protein-
ATE51_RS11110 (ATE51_05050)34248..34550+303WP_058914787.1hypothetical protein-
ATE51_RS11115 (ATE51_05051)34550..34792+243WP_052835045.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid-virB8 / virB9 / virB10 / virB11 / virD4 / virB4 / Cjp541..3739537395


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(3-89)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10616.28 Da        Isoelectric Point: 9.5064

>T59238 WP_053868684.1 NZ_CP013734:30842-31111 [Campylobacter coli]
MPYKITLSKKYKQKYKKANTKDRILIDEVVEKLSNDETLEEKYKDHALKGNYIGFRECHIKPDLLLVYRKNNDILELYLA
NLGNHNNIF

Download         Length: 270 bp

>T59238 NZ_CP013734:30842-31111 [Campylobacter coli]
ATGCCTTATAAAATTACATTATCTAAAAAATACAAGCAAAAATATAAAAAAGCAAACACAAAAGACAGAATATTGATTGA
TGAAGTTGTTGAAAAATTATCTAATGATGAAACATTAGAAGAAAAATACAAAGACCACGCATTAAAAGGAAATTATATTG
GTTTTAGAGAATGCCACATTAAACCTGATTTGTTATTAGTCTATCGCAAAAATAATGATATTTTAGAATTATATTTGGCT
AATTTAGGAAATCACAATAATATTTTTTAG

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 11187.70 Da        Isoelectric Point: 9.7619

>AT59238 WP_058914785.1 NZ_CP013734:30568-30852 [Campylobacter coli]
MFDYSKYENASEKQLIHALTLAEKRAEKLNSQLKENNEFFKFLQKKLKKSFNAKKTKKAEQRRPELDEAIEDYKNGNVET
YANFEEYKKAMNAL

Download         Length: 285 bp

>AT59238 NZ_CP013734:30568-30852 [Campylobacter coli]
ATGTTTGATTATTCTAAATATGAAAATGCTAGCGAAAAACAATTAATACACGCTTTGACTTTAGCAGAAAAAAGGGCGGA
GAAACTAAACTCGCAATTAAAAGAGAATAATGAATTTTTTAAATTTTTACAAAAAAAGTTAAAAAAATCTTTTAACGCCA
AAAAAACAAAAAAAGCAGAGCAAAGAAGACCTGAATTAGATGAAGCGATTGAAGATTATAAAAATGGAAATGTAGAAACC
TATGCTAATTTTGAAGAATATAAAAAGGCTATGAATGCCTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References