Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3268531..3268676 | Replicon | chromosome |
| Accession | NZ_CP013711 | ||
| Organism | Klebsiella pneumoniae strain J1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3268567..3268669 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3268531..3268676 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AU361_RS16210 | 3263661..3265721 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AU361_RS16215 | 3265725..3266384 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AU361_RS16220 | 3266463..3266693 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AU361_RS16225 | 3266806..3267180 | + | 375 | WP_023286640.1 | CopC domain-containing protein YobA | - |
| AU361_RS16230 | 3267184..3268053 | + | 870 | WP_023286639.1 | copper homeostasis membrane protein CopD | - |
| AU361_RS16235 | 3268070..3268408 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 3268531..3268676 | - | 146 | - | - | Antitoxin |
| - | 3268567..3268669 | + | 103 | - | - | Toxin |
| AU361_RS29070 | 3269043..3269186 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AU361_RS16245 | 3269291..3270259 | - | 969 | WP_074194451.1 | VirK/YbjX family protein | - |
| AU361_RS16250 | 3270416..3271069 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| AU361_RS16255 | 3271066..3271257 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AU361_RS16260 | 3271355..3271594 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AU361_RS16265 | 3271710..3273143 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T59215 NZ_CP013711:3268567-3268669 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT59215 NZ_CP013711:c3268676-3268531 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
