Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2252470..2252741 | Replicon | chromosome |
| Accession | NZ_CP013663 | ||
| Organism | Escherichia coli strain GB089 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2252508..2252611 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2252470..2252741 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO57_RS12705 | 2249627..2251066 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CO57_RS12710 | 2251184..2251420 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CO57_RS12715 | 2251525..2251716 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CO57_RS12720 | 2251717..2252373 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2252470..2252741 | + | 272 | - | - | Antitoxin |
| - | 2252508..2252611 | - | 104 | - | - | Toxin |
| CO57_RS12730 | 2252769..2253110 | - | 342 | WP_000976492.1 | YebY family protein | - |
| CO57_RS12735 | 2253123..2253995 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| CO57_RS12740 | 2253999..2254373 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CO57_RS12745 | 2254512..2254742 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CO57_RS12750 | 2254844..2255500 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| CO57_RS12755 | 2255524..2256186 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T59150 NZ_CP013663:c2252611-2252508 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT59150 NZ_CP013663:2252470-2252741 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
