Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2159597..2159868 | Replicon | chromosome |
| Accession | NZ_CP013662 | ||
| Organism | Escherichia coli strain 08-00022 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2159635..2159738 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2159597..2159868 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CP48_RS12415 | 2156754..2158193 | + | 1440 | WP_001400472.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CP48_RS12420 | 2158311..2158547 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| CP48_RS12425 | 2158652..2158843 | + | 192 | WP_001338167.1 | YebW family protein | - |
| CP48_RS12430 | 2158844..2159500 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 2159597..2159868 | + | 272 | - | - | Antitoxin |
| - | 2159635..2159738 | - | 104 | - | - | Toxin |
| CP48_RS12440 | 2159896..2160237 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CP48_RS12445 | 2160250..2161122 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CP48_RS12450 | 2161126..2161500 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| CP48_RS12455 | 2161639..2161869 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CP48_RS12460 | 2161971..2162627 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| CP48_RS12465 | 2162651..2163313 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T59124 NZ_CP013662:c2159738-2159635 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT59124 NZ_CP013662:2159597-2159868 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
