Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1020956..1021224 Replicon chromosome
Accession NZ_CP013658
Organism Escherichia coli strain uk_P46212

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1020994..1021096 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1020956..1021224 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AUO99_RS06295 1018114..1019553 + 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
AUO99_RS06300 1019670..1019906 + 237 WP_001295499.1 DUF1480 family protein -
AUO99_RS06305 1020011..1020202 + 192 WP_001296140.1 YebW family protein -
AUO99_RS06310 1020203..1020859 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 1020956..1021224 + 269 - - Antitoxin
- 1020994..1021096 - 103 - - Toxin
AUO99_RS06320 1021254..1021595 - 342 WP_000976472.1 YebY family protein -
AUO99_RS06325 1021608..1022480 - 873 WP_000879317.1 copper homeostasis membrane protein CopD -
AUO99_RS06330 1022484..1022858 - 375 WP_000168747.1 CopC domain-containing protein YobA -
AUO99_RS06335 1022997..1023227 + 231 WP_000916763.1 DNA polymerase III subunit theta -
AUO99_RS06340 1023329..1023985 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
AUO99_RS06345 1024009..1024671 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T59084 NZ_CP013658:c1021096-1020994 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT59084 NZ_CP013658:1020956-1021224 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References