58774

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 2851674..2852305 Replicon chromosome
Accession NZ_CP013475
Organism Mycobacterium tuberculosis strain 1458

Toxin (Protein)


Gene name vapC Uniprot ID G0TQ28
Locus tag BTB1458_RS13420 Protein ID WP_003413174.1
Coordinates 2851928..2852305 (+) Length 126 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P95006
Locus tag BTB1458_RS13415 Protein ID WP_003413167.1
Coordinates 2851674..2851931 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BTB1458_RS13385 2846933..2848138 - 1206 WP_003413027.1 chorismate synthase -
BTB1458_RS13390 2848246..2848560 + 315 WP_009937839.1 hypothetical protein -
BTB1458_RS13395 2848856..2850067 + 1212 WP_003900845.1 alpha/beta hydrolase family protein -
BTB1458_RS13400 2850194..2850855 + 662 Protein_2616 hypothetical protein -
BTB1458_RS22050 2850852..2851129 + 278 Protein_2617 type II toxin-antitoxin system VapB family antitoxin -
BTB1458_RS13410 2851222..2851635 + 414 WP_003413164.1 PIN domain nuclease -
BTB1458_RS13415 2851674..2851931 + 258 WP_003413167.1 ribbon-helix-helix domain-containing protein Antitoxin
BTB1458_RS13420 2851928..2852305 + 378 WP_003413174.1 type II toxin-antitoxin system VapC family toxin Toxin
BTB1458_RS13425 2852321..2852695 - 375 WP_003413177.1 hypothetical protein -
BTB1458_RS13430 2852795..2853190 - 396 WP_003413180.1 type II toxin-antitoxin system toxin 23S rRNA-specific endonuclease VapC20 -
BTB1458_RS13435 2853187..2853432 - 246 WP_003413183.1 type II toxin-antitoxin system antitoxin VapB20 -
BTB1458_RS13440 2853843..2854262 - 420 WP_003413190.1 A24 family peptidase -
BTB1458_RS13445 2854274..2855083 - 810 WP_003413193.1 shikimate dehydrogenase -
BTB1458_RS13450 2855080..2856333 - 1254 WP_003413196.1 endolytic transglycosylase MltG -
BTB1458_RS13455 2856326..2856838 - 513 WP_003413197.1 Holliday junction resolvase RuvX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(3-111)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 126 a.a.        Molecular weight: 13728.72 Da        Isoelectric Point: 4.4687

>T58774 WP_003413174.1 NZ_CP013475:2851928-2852305 [Mycobacterium tuberculosis]
VKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAVVWTLVTEDIARIGGRLAR
RYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDLQPPY

Download         Length: 378 bp

>T58774 NZ_CP013475:2851928-2852305 [Mycobacterium tuberculosis]
GTGAAGCTGATCGACACCACCATCGCGGTCGACCACCTTCGCGGCGAACCCGCGGCAGCCGTGCTGCTCGCCGAACTGAT
AAACAACGGTGAGGAGATCGCGGCCAGCGAGCTGGTCCGATTCGAACTCCTCGCCGGTGTGCGGGAAAGCGAACTCGCGG
CGCTCGAGGCCTTCTTCTCGGCAGTGGTGTGGACCCTGGTGACCGAGGACATTGCCCGGATCGGCGGACGACTCGCCCGT
CGATACCGGTCCAGCCACCGCGGTATCGACGACGTGGACTACCTGATCGCTGCGACCGCCATTGTGGTCGACGCCGACCT
GCTCACCACCAATGTGCGCCACTTCCCGATGTTCCCGGATCTGCAGCCGCCGTACTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9453.63 Da        Isoelectric Point: 10.6555

>AT58774 WP_003413167.1 NZ_CP013475:2851674-2851931 [Mycobacterium tuberculosis]
MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGRDFTGTEYVDAIRGDLNERLA
RLGLA

Download         Length: 258 bp

>AT58774 NZ_CP013475:2851674-2851931 [Mycobacterium tuberculosis]
ATGCGGACTCAGGTGACCCTGGGCAAAGAGGAGCTTGAGCTGCTCGATCGTGCCGCCAAGGCGAGTGGCGCATCGCGGTC
CGAACTCATCCGACGCGCAATTCACCGTGCCTACGGGACTGGATCCAAGCAGGAACGGCTCGCCGCGCTCGACCACAGCC
GTGGCTCGTGGCGAGGACGGGACTTCACCGGCACCGAGTATGTCGACGCCATTCGGGGCGACCTCAACGAACGACTTGCT
CGGCTCGGTCTGGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQ28

Antitoxin

Source ID Structure
AlphaFold DB A0A829C9W5

References