Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 1830857..1832101 Replicon chromosome
Accession NZ_CP013365
Organism Burkholderia territorii strain RF8-non-BP5

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag WS51_RS08095 Protein ID WP_069228918.1
Coordinates 1831520..1832101 (+) Length 194 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag WS51_RS08090 Protein ID WP_059806086.1
Coordinates 1830857..1831414 (+) Length 186 a.a.

Genomic Context

WS51_RS08065WS51_RS08075WS51_RS08090WS51_RS08095WS51_RS08100WS51_RS08110WS51_RS08070WS51_RS08080WS51_RS08085WS51_RS08105WS51_RS08115
Location: 1826040..1826414 (375 bp)
Type: Others
Protein ID: WP_059506549.1
Location: 1827486..1828121 (636 bp)
Type: Others
Protein ID: WP_069228915.1
Location: 1830857..1831414 (558 bp)
Type: Antitoxin
Protein ID: WP_059806086.1
Location: 1831520..1832101 (582 bp)
Type: Toxin
Protein ID: WP_069228918.1
Location: 1832160..1832888 (729 bp)
Type: Others
Protein ID: WP_069229163.1
Location: 1834616..1835521 (906 bp)
Type: Others
Protein ID: WP_059544211.1
Location: 1826481..1827194 (714 bp)
Type: Others
Protein ID: WP_069228914.1
Location: 1828189..1828920 (732 bp)
Type: Others
Protein ID: WP_069228916.1
Location: 1829126..1830529 (1404 bp)
Type: Others
Protein ID: WP_069228917.1
Location: 1832900..1834438 (1539 bp)
Type: Others
Protein ID: WP_069228919.1
Location: 1835593..1836732 (1140 bp)
Type: Others
Protein ID: WP_069228920.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
WS51_RS080651826040..1826414+375WP_059506549.1copper resistance protein CopC-
WS51_RS080701826481..1827194-714WP_069228914.1DUF4396 domain-containing protein-
WS51_RS080751827486..1828121+636WP_069228915.1cysteine hydrolase-
WS51_RS080801828189..1828920-732WP_069228916.1ribonuclease T2-
WS51_RS080851829126..1830529-1404WP_069228917.1hypothetical protein-
WS51_RS080901830857..1831414+558WP_059806086.1helix-turn-helix domain-containing proteinAntitoxin
WS51_RS080951831520..1832101+582WP_069228918.1HD domain-containing proteinToxin
WS51_RS081001832160..1832888+729WP_069229163.1class I SAM-dependent methyltransferase-
WS51_RS081051832900..1834438-1539WP_069228919.1MFS transporter-
WS51_RS081101834616..1835521+906WP_059544211.1LysR family transcriptional regulator-
WS51_RS081151835593..1836732-1140WP_069228920.1enoyl-CoA hydratase/isomerase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HD domain

(16-168)

Antitoxin

Cro/C1-type helix-turn-helix domain

(12-61)


Sequences

Toxin        


Download         Length: 194 a.a.        Molecular weight: 21310.86 Da        Isoelectric Point: 4.8334

>T58508 WP_069228918.1 NZ_CP013365:1831520-1832101 [Burkholderia territorii]
MNLDTIHARLDFLRDAERLKDVLRSGHTSAGRAESTAEHSWRLCLMALVFADALPDVDTTKLLKLCVVHDLGEALHGDIP
AIEQAAHPDKSTHERDDLLTLTAGLDRALRDEIVALWDEYEAAASPEARAAKALDKLETILQHNQGSNPPDFDYAFNLGY
GRRYTDAAPLFVALRAIVDADTQRRIDARGSDA

Download         Length: 582 bp

>T58508 NZ_CP013365:1831520-1832101 [Burkholderia territorii]
ATGAACCTCGATACGATCCACGCGCGGCTCGATTTCCTGCGCGACGCCGAACGCCTGAAAGACGTGCTGCGCAGCGGCCA
TACGTCGGCCGGGCGCGCCGAAAGCACGGCCGAACACAGCTGGCGGCTGTGCCTGATGGCGCTCGTGTTTGCCGATGCAC
TGCCCGATGTCGATACGACGAAGCTGTTGAAGCTGTGCGTCGTCCACGATCTCGGCGAAGCGCTTCACGGCGACATCCCC
GCGATCGAGCAGGCCGCGCATCCTGACAAAAGCACACACGAACGCGACGACCTGCTGACGCTGACGGCCGGACTGGACCG
CGCGCTGCGCGACGAGATCGTCGCACTGTGGGACGAATACGAGGCGGCGGCATCGCCGGAAGCGCGCGCGGCGAAGGCGC
TCGACAAGCTCGAGACGATCCTGCAACACAACCAAGGCAGCAATCCGCCGGATTTCGACTACGCGTTCAATCTCGGCTAC
GGCCGGCGCTACACCGACGCGGCCCCGCTGTTCGTCGCGCTCCGCGCGATCGTCGATGCGGACACGCAACGCAGGATCGA
CGCACGCGGCAGCGACGCGTAA

Antitoxin


Download         Length: 186 a.a.        Molecular weight: 20318.38 Da        Isoelectric Point: 11.3605

>AT58508 WP_059806086.1 NZ_CP013365:1830857-1831414 [Burkholderia territorii]
MRNSPLHTPPLGPQLKRWRTLHRVKQSHAAELFGVAQSTISRWEAGIQQMSADERAMAERLLAARLDSAGDRALARLIAG
STARMHLVCDLTHRLLACSPSRAAEFTRPLSTLVGTSLWRYASPEIVRMEAALDPLGWHDRAGPPSVEFATGANASRVVP
IRGSTCRWTRMMLSDGSAARLVETL

Download         Length: 558 bp

>AT58508 NZ_CP013365:1830857-1831414 [Burkholderia territorii]
ATGCGCAACTCACCGCTTCACACTCCGCCGCTCGGCCCGCAACTCAAGCGTTGGCGCACGCTGCATCGCGTGAAGCAGAG
CCACGCGGCCGAGTTGTTCGGCGTCGCGCAATCGACGATCTCGCGCTGGGAAGCCGGTATCCAGCAGATGTCCGCCGACG
AGCGCGCGATGGCCGAACGGTTGCTTGCCGCGCGCCTCGATTCGGCGGGCGACCGCGCGCTCGCCCGGCTGATCGCGGGC
AGCACGGCCCGCATGCATCTCGTGTGCGACCTCACGCACCGTCTGCTCGCCTGCTCGCCGTCGCGCGCGGCCGAGTTCAC
GCGGCCGCTGTCGACATTGGTCGGCACGTCGCTCTGGCGGTACGCGTCGCCGGAGATCGTCCGCATGGAAGCCGCGCTCG
ACCCGCTCGGCTGGCACGATCGCGCGGGACCGCCGAGCGTCGAATTCGCGACCGGCGCCAATGCGTCGCGCGTCGTGCCG
ATCCGCGGCAGCACCTGCCGATGGACGCGGATGATGCTGTCGGACGGCTCCGCCGCGCGGCTCGTCGAAACGCTGTAG

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References