Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 1680094..1680749 Replicon chromosome
Accession NZ_CP013365
Organism Burkholderia territorii strain RF8-non-BP5

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag WS51_RS07385 Protein ID WP_069228872.1
Coordinates 1680094..1680513 (-) Length 140 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag WS51_RS07390 Protein ID WP_059506772.1
Coordinates 1680510..1680749 (-) Length 80 a.a.

Genomic Context

WS51_RS07360WS51_RS07365WS51_RS07370WS51_RS07380WS51_RS07395WS51_RS07400WS51_RS07405WS51_RS07410WS51_RS07375WS51_RS07385WS51_RS07390
Location: 1675635..1676429 (795 bp)
Type: Others
Protein ID: WP_069228871.1
Location: 1676633..1677556 (924 bp)
Type: Others
Protein ID: WP_069229157.1
Location: 1677688..1678236 (549 bp)
Type: Others
Protein ID: WP_059506731.1
Location: 1678694..1679989 (1296 bp)
Type: Others
Protein ID: WP_059449562.1
Location: 1681071..1683314 (2244 bp)
Type: Others
Protein ID: WP_069228873.1
Location: 1683318..1684073 (756 bp)
Type: Others
Protein ID: WP_069228874.1
Location: 1684070..1684753 (684 bp)
Type: Others
Protein ID: WP_059544061.1
Location: 1685110..1685694 (585 bp)
Type: Others
Protein ID: WP_059506727.1
Location: 1678327..1678461 (135 bp)
Type: Others
Protein ID: WP_059449563.1
Location: 1680094..1680513 (420 bp)
Type: Toxin
Protein ID: WP_069228872.1
Location: 1680510..1680749 (240 bp)
Type: Antitoxin
Protein ID: WP_059506772.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
WS51_RS073601675635..1676429+795WP_069228871.1AraC family transcriptional regulator-
WS51_RS073651676633..1677556+924WP_069229157.1DMT family transporter-
WS51_RS073701677688..1678236+549WP_059506731.1hypothetical protein-
WS51_RS073751678327..1678461-135WP_059449563.1entericidin A/B family lipoprotein-
WS51_RS073801678694..1679989+1296WP_059449562.1aspartate carbamoyltransferase-
WS51_RS073851680094..1680513-420WP_069228872.1type II toxin-antitoxin system VapC family toxinToxin
WS51_RS073901680510..1680749-240WP_059506772.1hypothetical proteinAntitoxin
WS51_RS073951681071..1683314+2244WP_069228873.1TonB-dependent siderophore receptor-
WS51_RS074001683318..1684073+756WP_069228874.1sel1 repeat family protein-
WS51_RS074051684070..1684753+684WP_059544061.1Fe2+-dependent dioxygenase-
WS51_RS074101685110..1685694+585WP_059506727.1nucleotidyltransferase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-122)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 140 a.a.        Molecular weight: 14881.23 Da        Isoelectric Point: 5.1832

>T58507 WP_069228872.1 NZ_CP013365:c1680513-1680094 [Burkholderia territorii]
MILVDTNVISEPLRREPSGAVIEWLDAQIVETLFLSAISLAEMRFGVAALPAGRRRDWLDQSIEQRVLPLFRGRILPFDD
AASKAYASLRAKARAAGLALVPADGFIAATAAANGLIVATRDVAPFEAAGLRVIDPWAG

Download         Length: 420 bp

>T58507 NZ_CP013365:c1680513-1680094 [Burkholderia territorii]
ATGATCCTGGTCGATACCAACGTCATTTCCGAGCCGTTGCGGCGCGAGCCGAGCGGGGCGGTGATCGAATGGCTCGACGC
GCAGATCGTCGAGACGTTGTTTCTTTCCGCGATCAGTCTCGCGGAAATGCGATTCGGCGTGGCAGCGTTGCCGGCAGGGC
GCAGGCGGGACTGGCTGGACCAAAGCATCGAGCAGCGCGTCCTGCCGCTGTTTCGCGGCCGGATCCTGCCGTTCGACGAT
GCCGCCAGCAAGGCGTATGCGAGCCTTCGCGCGAAGGCTCGTGCGGCAGGCCTCGCGCTGGTACCGGCCGATGGTTTTAT
CGCCGCGACGGCCGCGGCGAACGGCTTGATCGTCGCCACGCGCGACGTCGCGCCGTTCGAAGCGGCAGGCCTGCGCGTGA
TCGATCCGTGGGCCGGCTGA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 8910.03 Da        Isoelectric Point: 6.4704

>AT58507 WP_059506772.1 NZ_CP013365:c1680749-1680510 [Burkholderia territorii]
MAVITVRNLSDEVHRALRIRAAQHGRSTEAEVRDILEQAVRPDGRPRLGTLLAEIGREAGGIDFEIQRDRSRTDPMSFE

Download         Length: 240 bp

>AT58507 NZ_CP013365:c1680749-1680510 [Burkholderia territorii]
ATGGCCGTGATCACAGTTCGAAATTTGTCCGACGAGGTGCATCGCGCGCTTCGAATCCGTGCGGCGCAACATGGCCGCAG
CACCGAAGCCGAGGTGCGCGACATTCTGGAGCAGGCCGTCCGGCCAGACGGGCGGCCGAGGCTCGGAACGTTGTTGGCCG
AGATCGGGCGGGAGGCCGGCGGTATCGATTTCGAGATTCAGCGCGACAGATCGCGCACCGATCCGATGAGCTTCGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References