Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4161488..4161633 | Replicon | chromosome |
| Accession | NZ_CP013322 | ||
| Organism | Klebsiella pneumoniae strain CAV1193 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4161524..4161626 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4161488..4161633 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AGG09_RS20625 | 4156618..4158678 | + | 2061 | WP_040213005.1 | oligopeptidase B | - |
| AGG09_RS20630 | 4158682..4159341 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| AGG09_RS20635 | 4159420..4159650 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AGG09_RS20640 | 4159763..4160137 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AGG09_RS20645 | 4160141..4161010 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| AGG09_RS20650 | 4161027..4161365 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4161488..4161633 | - | 146 | - | - | Antitoxin |
| - | 4161524..4161626 | + | 103 | - | - | Toxin |
| AGG09_RS32530 | 4162001..4162144 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AGG09_RS20660 | 4162249..4163217 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AGG09_RS20665 | 4163374..4164027 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| AGG09_RS20670 | 4164024..4164215 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AGG09_RS20675 | 4164313..4164552 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AGG09_RS20680 | 4164668..4166101 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T58440 NZ_CP013322:4161524-4161626 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT58440 NZ_CP013322:c4161633-4161488 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
