58168

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tad-ata/Tad-HTH_37
Location 3477083..3477783 Replicon chromosome
Accession NZ_CP013234
Organism Collimonas pratensis strain Ter91

Toxin (Protein)


Gene name tad Uniprot ID -
Locus tag CPter91_RS25790 Protein ID WP_082792872.1
Coordinates 3477421..3477783 (-) Length 121 a.a.

Antitoxin (Protein)


Gene name ata Uniprot ID -
Locus tag CPter91_RS15560 Protein ID WP_082792871.1
Coordinates 3477083..3477424 (-) Length 114 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CPter91_RS15530 3472129..3472326 - 198 WP_061941797.1 hypothetical protein -
CPter91_RS15535 3473127..3473696 + 570 WP_061941799.1 flavin reductase family protein -
CPter91_RS15540 3473730..3474488 - 759 WP_061946300.1 SDR family oxidoreductase -
CPter91_RS15545 3474698..3475513 + 816 WP_061941800.1 ABC transporter substrate-binding protein -
CPter91_RS15550 3475648..3476385 + 738 WP_205631716.1 ABC transporter permease subunit -
CPter91_RS15555 3476388..3477101 + 714 WP_061946303.1 amino acid ABC transporter permease -
CPter91_RS15560 3477083..3477424 - 342 WP_082792871.1 helix-turn-helix domain-containing protein Antitoxin
CPter91_RS25790 3477421..3477783 - 363 WP_082792872.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CPter91_RS15570 3477938..3478717 + 780 WP_061941805.1 translesion DNA synthesis-associated protein ImuA -
CPter91_RS15575 3478650..3480140 + 1491 WP_061941806.1 DNA polymerase Y family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(17-110)

Antitoxin

Cro/C1-type helix-turn-helix domain

(38-94)


Sequences

Toxin        


Download         Length: 121 a.a.        Molecular weight: 13281.48 Da        Isoelectric Point: 8.8612

>T58168 WP_082792872.1 NZ_CP013234:c3477783-3477421 [Collimonas pratensis]
MISSFLRPLRWVGSAKKDLGEMPVEVQAAFGYALHLAQIGSKHDQAKPLKGFGGAGVLEIVEDCQGDTYRAICTVRCVEE
LYVLHCFQKKSVSGSATPKPDMDLIRTRLKTVIAMQRSRE

Download         Length: 363 bp

>T58168 NZ_CP013234:c3477783-3477421 [Collimonas pratensis]
ATGATATCTTCTTTTTTACGGCCTTTGCGCTGGGTTGGATCAGCGAAAAAAGATTTGGGTGAGATGCCGGTAGAAGTTCA
GGCTGCTTTTGGTTATGCGCTGCATTTGGCCCAAATCGGCAGTAAGCACGATCAGGCCAAGCCGTTGAAAGGCTTTGGCG
GCGCAGGTGTCCTGGAAATAGTAGAAGACTGCCAGGGGGATACATATCGCGCCATATGCACAGTACGTTGTGTCGAGGAG
CTTTACGTACTGCATTGTTTTCAGAAAAAGTCCGTTAGCGGTAGCGCCACACCCAAGCCGGATATGGATTTGATTCGAAC
GCGATTGAAAACTGTAATTGCAATGCAAAGGAGCAGAGAGTGA

Antitoxin


Download         Length: 114 a.a.        Molecular weight: 12477.52 Da        Isoelectric Point: 9.7512

>AT58168 WP_082792871.1 NZ_CP013234:c3477424-3477083 [Collimonas pratensis]
VNQKVTFNGIDIEIGSDNPYADLGFPDAEEMLVKAKLAHEIAQIIKSRHLTQQRAAELLGMPQPKLSEMLRGKFRGISQA
KMVECLNRLGRDVDIVVKKTGRNAIGHTQVVVA

Download         Length: 342 bp

>AT58168 NZ_CP013234:c3477424-3477083 [Collimonas pratensis]
GTGAATCAGAAAGTTACTTTTAATGGCATCGATATTGAAATCGGCAGCGACAATCCCTATGCCGACCTGGGCTTCCCTGA
TGCCGAAGAGATGCTCGTCAAGGCCAAGCTGGCTCATGAAATCGCACAAATCATCAAGAGCCGGCACTTGACTCAGCAGA
GAGCCGCCGAACTGTTGGGAATGCCCCAACCCAAGCTCTCGGAAATGCTGCGAGGAAAATTCAGAGGCATCAGCCAGGCC
AAGATGGTGGAGTGCTTGAACCGTCTAGGCCGTGACGTCGACATCGTGGTGAAGAAAACCGGCCGGAACGCAATCGGCCA
CACTCAGGTAGTGGTGGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References