Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 5197568..5198087 Replicon chromosome
Accession NZ_CP013232
Organism Collimonas fungivorans strain Ter6

Toxin (Protein)


Gene name relE Uniprot ID A0A127PIH3
Locus tag CFter6_RS22795 Protein ID WP_061541840.1
Coordinates 5197568..5197849 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A127PIC5
Locus tag CFter6_RS22800 Protein ID WP_061542534.1
Coordinates 5197839..5198087 (-) Length 83 a.a.

Genomic Context

CFter6_RS22780CFter6_RS22790CFter6_RS22810CFter6_RS22815CFter6_RS22820CFter6_RS22785CFter6_RS22795CFter6_RS22800CFter6_RS22805
Location: 5193492..5195285 (1794 bp)
Type: Others
Protein ID: WP_082814947.1
Location: 5195902..5197533 (1632 bp)
Type: Others
Protein ID: WP_061541839.1
Location: 5198827..5199396 (570 bp)
Type: Others
Protein ID: WP_014008055.1
Location: 5199537..5199944 (408 bp)
Type: Others
Protein ID: WP_014008056.1
Location: 5199953..5200672 (720 bp)
Type: Others
Protein ID: WP_061542536.1
Location: 5195329..5195646 (318 bp)
Type: Others
Protein ID: WP_061541838.1
Location: 5197568..5197849 (282 bp)
Type: Toxin
Protein ID: WP_061541840.1
Location: 5197839..5198087 (249 bp)
Type: Antitoxin
Protein ID: WP_061542534.1
Location: 5198331..5198693 (363 bp)
Type: Others
Protein ID: WP_061542535.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CFter6_RS227805193492..5195285+1794WP_082814947.1FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC-
CFter6_RS227855195329..5195646-318WP_061541838.1YXWGXW repeat-containing protein-
CFter6_RS227905195902..5197533+1632WP_061541839.1NAD(P)/FAD-dependent oxidoreductase-
CFter6_RS227955197568..5197849-282WP_061541840.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CFter6_RS228005197839..5198087-249WP_061542534.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
CFter6_RS228055198331..5198693-363WP_061542535.1hypothetical protein-
CFter6_RS228105198827..5199396+570WP_014008055.1MASE1 domain-containing protein-
CFter6_RS228155199537..5199944+408WP_014008056.1biopolymer transporter ExbD-
CFter6_RS228205199953..5200672+720WP_061542536.1TonB family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10973.80 Da        Isoelectric Point: 10.7271

>T58160 WP_061541840.1 NZ_CP013232:c5197849-5197568 [Collimonas fungivorans]
MSFELAFLEEALKEWRKLDQGMREQFKKKLAERLHTPHVPSAQLSGSRSRYKIKLRQAGYRLVYEVRDQELIVLVVAVGK
RERNAVYKAAEKR

Download         Length: 282 bp

>T58160 NZ_CP013232:c5197849-5197568 [Collimonas fungivorans]
ATGAGCTTTGAACTGGCTTTCCTTGAGGAAGCATTGAAGGAATGGCGCAAGCTGGATCAAGGCATGCGCGAGCAGTTCAA
AAAGAAACTGGCGGAACGATTGCATACTCCTCATGTTCCATCCGCACAGTTATCCGGCTCCAGAAGCCGATATAAAATCA
AGCTGCGCCAGGCCGGCTACCGGCTAGTCTACGAAGTGCGTGACCAGGAGTTGATCGTGCTGGTCGTCGCCGTAGGCAAG
CGCGAGCGTAACGCAGTGTACAAGGCTGCGGAAAAACGTTAG

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 8888.30 Da        Isoelectric Point: 4.5338

>AT58160 WP_061542534.1 NZ_CP013232:c5198087-5197839 [Collimonas fungivorans]
MAHLILAETTASVSELKKDPMGTVAAGEGFPVVILNRNQPAFYCVPAKAYEALMNKLEDMELNAVADAREGQAVIRVKLD
EL

Download         Length: 249 bp

>AT58160 NZ_CP013232:c5198087-5197839 [Collimonas fungivorans]
ATGGCACACCTGATTCTTGCCGAAACAACCGCCAGCGTTTCCGAGTTGAAAAAAGACCCTATGGGAACTGTTGCTGCAGG
TGAAGGATTTCCTGTAGTGATATTGAACCGGAACCAGCCAGCTTTTTATTGTGTCCCGGCAAAAGCCTATGAAGCGCTGA
TGAACAAGCTGGAAGACATGGAGCTGAATGCCGTTGCAGACGCCCGCGAAGGGCAAGCTGTTATCAGGGTCAAGCTGGAT
GAGCTTTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBA0A127PIH3

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A127PIC5

References