58153

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tad-ata/Tad-HTH_37
Location 3574385..3575085 Replicon chromosome
Accession NZ_CP013232
Organism Collimonas fungivorans strain Ter6

Toxin (Protein)


Gene name tad Uniprot ID -
Locus tag CFter6_RS15295 Protein ID WP_082814809.1
Coordinates 3574723..3575085 (-) Length 121 a.a.

Antitoxin (Protein)


Gene name ata Uniprot ID -
Locus tag CFter6_RS15290 Protein ID WP_082814808.1
Coordinates 3574385..3574726 (-) Length 114 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CFter6_RS15260 3569440..3570429 + 990 WP_061540657.1 Gfo/Idh/MocA family oxidoreductase -
CFter6_RS15265 3570498..3571067 + 570 WP_061542386.1 flavin reductase family protein -
CFter6_RS15270 3571101..3571859 - 759 WP_061540658.1 SDR family oxidoreductase -
CFter6_RS15275 3572059..3572874 + 816 WP_061540659.1 ABC transporter substrate-binding protein -
CFter6_RS15280 3572962..3573714 + 753 WP_061540660.1 amino acid ABC transporter permease -
CFter6_RS15285 3573711..3574403 + 693 WP_082814807.1 amino acid ABC transporter permease -
CFter6_RS15290 3574385..3574726 - 342 WP_082814808.1 helix-turn-helix domain-containing protein Antitoxin
CFter6_RS15295 3574723..3575085 - 363 WP_082814809.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CFter6_RS15300 3575243..3576028 + 786 WP_082814810.1 translesion DNA synthesis-associated protein ImuA -
CFter6_RS15305 3575961..3577452 + 1492 Protein_3099 DNA polymerase Y family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(17-110)

Antitoxin

Cro/C1-type helix-turn-helix domain

(38-94)


Sequences

Toxin        


Download         Length: 121 a.a.        Molecular weight: 13178.26 Da        Isoelectric Point: 9.8516

>T58153 WP_082814809.1 NZ_CP013232:c3575085-3574723 [Collimonas fungivorans]
MISAFTRPLHWVGSAKKDLAAMPSEVQAAFGYALHLAQAGGKHYQAKPMKGFGGAGVLEIVEDCQGDTYRAIYTVRYAEA
LYVLHCFQKKSVSGSATPKPDMDLIRTRLKTAIAMQRSRE

Download         Length: 363 bp

>T58153 NZ_CP013232:c3575085-3574723 [Collimonas fungivorans]
ATGATATCTGCTTTTACGAGACCCCTGCACTGGGTAGGTTCGGCGAAAAAAGACCTTGCAGCGATGCCGTCAGAAGTTCA
AGCCGCTTTTGGTTACGCGTTGCATTTGGCCCAGGCCGGCGGCAAGCATTATCAGGCCAAACCGATGAAGGGTTTTGGCG
GCGCGGGTGTACTGGAAATTGTGGAAGATTGCCAAGGGGATACGTATCGAGCCATCTATACGGTGCGCTATGCCGAGGCA
CTTTATGTGCTGCATTGCTTTCAGAAAAAGTCTGTTAGCGGTAGCGCCACACCCAAGCCGGATATGGATTTGATTCGAAC
CAGATTGAAAACTGCAATCGCAATGCAAAGGAGTAGAGAGTGA

Antitoxin


Download         Length: 114 a.a.        Molecular weight: 12417.42 Da        Isoelectric Point: 9.0825

>AT58153 WP_082814808.1 NZ_CP013232:c3574726-3574385 [Collimonas fungivorans]
VNQKVTINGIDIEIGSDNPYADLGFPDADEMLVKAKLAHEISQIIRSRHLTQQVAADLLGMPQPKLSEMLRGKFRGISQA
KMIECLNRLGRDVDIVVKKTSRSAPGHTQVVLA

Download         Length: 342 bp

>AT58153 NZ_CP013232:c3574726-3574385 [Collimonas fungivorans]
GTGAATCAGAAAGTAACTATCAACGGTATCGATATTGAAATAGGTAGCGATAACCCCTATGCCGATCTCGGTTTCCCCGA
TGCCGACGAAATGCTGGTCAAGGCCAAGCTGGCGCATGAGATCTCCCAGATCATCAGGAGCCGGCATTTGACTCAGCAAG
TTGCTGCCGATCTGCTGGGCATGCCCCAGCCTAAACTGTCAGAAATGTTGCGCGGAAAATTCAGGGGCATCAGCCAGGCC
AAGATGATCGAGTGCCTGAACCGCCTCGGGCGTGACGTGGACATCGTCGTGAAGAAGACCAGCCGCTCGGCCCCAGGCCA
CACTCAGGTAGTGCTGGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References