Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1457466..1457737 | Replicon | chromosome |
| Accession | NZ_CP013112 | ||
| Organism | Escherichia coli strain YD786 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1457504..1457607 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1457466..1457737 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASE18_RS07275 | 1454623..1456062 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ASE18_RS07280 | 1456180..1456416 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ASE18_RS07285 | 1456521..1456712 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ASE18_RS07290 | 1456713..1457369 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1457466..1457737 | + | 272 | - | - | Antitoxin |
| - | 1457504..1457607 | - | 104 | - | - | Toxin |
| ASE18_RS07300 | 1457765..1458106 | - | 342 | WP_000976492.1 | YebY family protein | - |
| ASE18_RS07305 | 1458119..1458991 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| ASE18_RS07310 | 1458995..1459369 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| ASE18_RS07315 | 1459508..1459738 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ASE18_RS07320 | 1459840..1460496 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ASE18_RS07325 | 1460520..1461182 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T57921 NZ_CP013112:c1457607-1457504 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT57921 NZ_CP013112:1457466-1457737 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
