Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2653433..2653704 | Replicon | chromosome |
| Accession | NZ_CP013031 | ||
| Organism | Escherichia coli strain H1827/12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2653471..2653574 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2653433..2653704 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB847_RS13220 | 2650590..2652029 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AB847_RS13225 | 2652147..2652383 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AB847_RS13230 | 2652488..2652679 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AB847_RS13235 | 2652680..2653336 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2653433..2653704 | + | 272 | - | - | Antitoxin |
| - | 2653471..2653574 | - | 104 | - | - | Toxin |
| AB847_RS13245 | 2653731..2654072 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AB847_RS13250 | 2654085..2654957 | - | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| AB847_RS13255 | 2654961..2655335 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AB847_RS13260 | 2655474..2655704 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AB847_RS13265 | 2655806..2656462 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| AB847_RS13270 | 2656486..2657148 | + | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T57804 NZ_CP013031:c2653574-2653471 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT57804 NZ_CP013031:2653433-2653704 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
