Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2683552..2683823 | Replicon | chromosome |
| Accession | NZ_CP013029 | ||
| Organism | Escherichia coli strain 2012C-4227 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2683590..2683693 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2683552..2683823 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKK22_RS14715 | 2680710..2682148 | + | 1439 | Protein_2697 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AKK22_RS14720 | 2682266..2682502 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AKK22_RS14725 | 2682607..2682798 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AKK22_RS14730 | 2682799..2683455 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2683552..2683823 | + | 272 | - | - | Antitoxin |
| - | 2683590..2683693 | - | 104 | - | - | Toxin |
| AKK22_RS14740 | 2683851..2684192 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AKK22_RS14745 | 2684205..2685077 | - | 873 | Protein_2702 | copper homeostasis membrane protein CopD | - |
| AKK22_RS14750 | 2685081..2685455 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AKK22_RS14755 | 2685594..2685824 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AKK22_RS14760 | 2685926..2686582 | + | 657 | WP_032207802.1 | carbon-nitrogen hydrolase family protein | - |
| AKK22_RS14765 | 2686606..2687268 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T57771 NZ_CP013029:c2683693-2683590 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCACCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCACCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT57771 NZ_CP013029:2683552-2683823 [Escherichia coli]
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGTGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCC
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGTGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCC
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
