Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4452462..4452730 | Replicon | chromosome |
| Accession | NZ_CP013025 | ||
| Organism | Escherichia coli strain 2009C-3133 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4452590..4452692 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4452462..4452730 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MJ49_RS22860 | 4449015..4449677 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MJ49_RS22865 | 4449701..4450357 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein | - |
| MJ49_RS22870 | 4450459..4450689 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| MJ49_RS22875 | 4450828..4451202 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MJ49_RS22880 | 4451206..4452078 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| MJ49_RS22885 | 4452091..4452432 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4452462..4452730 | - | 269 | - | - | Antitoxin |
| - | 4452590..4452692 | + | 103 | - | - | Toxin |
| MJ49_RS22895 | 4452827..4453483 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| MJ49_RS22900 | 4453484..4453675 | - | 192 | WP_001317886.1 | YebW family protein | - |
| MJ49_RS22905 | 4453780..4454016 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| MJ49_RS22910 | 4454134..4455573 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T57741 NZ_CP013025:4452590-4452692 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT57741 NZ_CP013025:c4452730-4452462 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
