Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 868071..868636 Replicon chromosome
Accession NZ_CP013013
Organism Vibrio cholerae strain Env-390

Toxin (Protein)


Gene name relE Uniprot ID D7HCW8
Locus tag AP033_RS04015 Protein ID WP_000869999.1
Coordinates 868071..868358 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID D0IIK3
Locus tag AP033_RS04020 Protein ID WP_000086649.1
Coordinates 868355..868636 (-) Length 94 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AP033_RS03975 863470..863985 - 516 WP_001201532.1 lipocalin family protein -
AP033_RS19125 864012..864104 - 93 WP_014164112.1 DUF3265 domain-containing protein -
AP033_RS03980 864126..864704 - 579 WP_000110120.1 hypothetical protein -
AP033_RS03985 864933..865175 + 243 WP_001107719.1 type II toxin-antitoxin system ParD family antitoxin -
AP033_RS03990 865172..865471 + 300 WP_000802136.1 type II toxin-antitoxin system RelE/ParE family toxin -
AP033_RS03995 865602..866117 - 516 WP_000100089.1 ClbS/DfsB family four-helix bundle protein -
AP033_RS04000 866312..866494 - 183 WP_001889223.1 DUF645 family protein -
AP033_RS04005 866789..867238 - 450 WP_000480555.1 hypothetical protein -
AP033_RS04010 867373..867912 - 540 WP_000884561.1 hydrolase -
AP033_RS04015 868071..868358 - 288 WP_000869999.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
AP033_RS04020 868355..868636 - 282 WP_000086649.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
AP033_RS04025 868850..869275 - 426 WP_000735184.1 hypothetical protein -
AP033_RS19150 870094..870375 - 282 WP_080033523.1 DUF1289 domain-containing protein -
AP033_RS20040 870324..870437 - 114 WP_080033520.1 acetyltransferase -
AP033_RS04030 870494..871045 - 552 WP_001008561.1 VRR-NUC domain-containing protein -
AP033_RS19160 871316..871639 - 324 WP_080033519.1 DUF3709 domain-containing protein -
AP033_RS04035 871771..872439 - 669 WP_000852842.1 hypothetical protein -
AP033_RS04040 872597..872959 - 363 WP_170831679.1 DUF4144 domain-containing protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integron - - 829699..942463 112764


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 96 a.a.        Molecular weight: 10997.74 Da        Isoelectric Point: 6.0710

>T57711 WP_000869999.1 NZ_CP013013:c868358-868071 [Vibrio cholerae]
MKVVWSPLALQKLGDAAEFIALDNPSAAEKWVNEVFDKTELLGSMPEMGRMVPEMPHTNYREIIFGHYRIIYSLSHEIRV
LTVRNCRQLLTEHDV

Download         Length: 288 bp

>T57711 NZ_CP013013:c868358-868071 [Vibrio cholerae]
ATGAAAGTAGTTTGGTCACCTCTAGCGTTACAAAAACTGGGTGATGCCGCAGAGTTTATTGCTTTGGATAACCCATCAGC
TGCAGAAAAGTGGGTGAATGAAGTATTCGACAAAACGGAATTGCTCGGCTCAATGCCAGAAATGGGCCGCATGGTTCCTG
AAATGCCTCATACGAACTACCGTGAAATAATTTTTGGTCATTACCGCATTATTTATAGTTTGAGCCACGAAATCCGCGTT
CTAACAGTTCGTAACTGTCGTCAATTGCTCACGGAACATGATGTGTGA

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10361.93 Da        Isoelectric Point: 5.1548

>AT57711 WP_000086649.1 NZ_CP013013:c868636-868355 [Vibrio cholerae]
MSRIHLDQDIQPLSEFRAGVASFIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLAAGLGISN
EDARSQVLGRIIK

Download         Length: 282 bp

>AT57711 NZ_CP013013:c868636-868355 [Vibrio cholerae]
ATGAGCCGTATTCACCTTGATCAAGATATTCAGCCTTTGTCTGAGTTCCGTGCTGGCGTTGCATCATTTATCAAACAGAT
CAATGAGACTCGTCGACCATTGGTTATTACACAACGAGGTAAAGGTGTAGCCGTTGTTCTTGACGTTGCGGAGTATGAAG
CAATGCAAGAGAAAATCGAATTACTCGAAGAAATGCGTACTGCAGAAGCTCAATTGGCTGCAGGTTTAGGTATATCAAAC
GAAGATGCTCGTTCACAAGTTCTGGGGCGCATCATCAAATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A0H3AEF1


Antitoxin

Source ID Structure
AlphaFold DB A0A0K9UIW4

References