Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2905534..2905678 | Replicon | chromosome |
| Accession | NZ_CP012999 | ||
| Organism | Enterobacter sp. E20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2905540..2905643 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2905534..2905678 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NI40_RS13540 | 2900697..2902139 | + | 1443 | WP_039263643.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NI40_RS13545 | 2902246..2902485 | + | 240 | WP_008500472.1 | YebV family protein | - |
| NI40_RS13550 | 2902520..2903164 | - | 645 | WP_033145837.1 | protein-serine/threonine phosphatase | - |
| NI40_RS13555 | 2903331..2904272 | + | 942 | WP_039263644.1 | VirK/YbjX family protein | - |
| NI40_RS13560 | 2904446..2905342 | + | 897 | WP_039263645.1 | benzoate transporter | - |
| - | 2905534..2905678 | + | 145 | - | - | Antitoxin |
| - | 2905540..2905643 | - | 104 | - | - | Toxin |
| NI40_RS13565 | 2905782..2906120 | - | 339 | WP_039263646.1 | YebY family protein | - |
| NI40_RS13570 | 2906137..2907006 | - | 870 | WP_039263647.1 | copper homeostasis membrane protein CopD | - |
| NI40_RS13575 | 2907008..2907379 | - | 372 | WP_033145842.1 | CopC domain-containing protein YobA | - |
| NI40_RS13580 | 2907516..2907746 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| NI40_RS13585 | 2907857..2908507 | + | 651 | WP_039263648.1 | carbon-nitrogen hydrolase family protein | - |
| NI40_RS13590 | 2908532..2909194 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T57673 NZ_CP012999:c2905643-2905540 [Enterobacter sp. E20]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT57673 NZ_CP012999:2905534-2905678 [Enterobacter sp. E20]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
