Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4685044..4685189 | Replicon | chromosome |
| Accession | NZ_CP012987 | ||
| Organism | Klebsiella pneumoniae strain KpN01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4685080..4685182 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4685044..4685189 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AQD68_RS23360 | 4680174..4682234 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AQD68_RS23365 | 4682238..4682897 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| AQD68_RS23370 | 4682976..4683206 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AQD68_RS23375 | 4683319..4683693 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AQD68_RS23380 | 4683697..4684566 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AQD68_RS23385 | 4684583..4684921 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4685044..4685189 | - | 146 | - | - | Antitoxin |
| - | 4685080..4685182 | + | 103 | - | - | Toxin |
| AQD68_RS31930 | 4685557..4685700 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AQD68_RS23395 | 4685805..4686773 | - | 969 | WP_073971755.1 | VirK/YbjX family protein | - |
| AQD68_RS23400 | 4686930..4687583 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| AQD68_RS23405 | 4687580..4687771 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AQD68_RS23410 | 4687869..4688108 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AQD68_RS23415 | 4688224..4689657 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T57616 NZ_CP012987:4685080-4685182 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT57616 NZ_CP012987:c4685189-4685044 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
