Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2697188..2697358 | Replicon | chromosome |
| Accession | NZ_CP012871 | ||
| Organism | [Enterobacter] lignolyticus strain G5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2697194..2697296 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2697188..2697358 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AO703_RS12445 | 2692266..2692910 | - | 645 | WP_062741367.1 | protein-serine/threonine phosphatase | - |
| AO703_RS12450 | 2693076..2694035 | + | 960 | WP_013365951.1 | VirK/YbjX family protein | - |
| AO703_RS23345 | 2694156..2694299 | + | 144 | WP_164504983.1 | Ecr family regulatory small membrane protein | - |
| AO703_RS12455 | 2694979..2695257 | + | 279 | WP_062741368.1 | DUF1471 domain-containing protein | - |
| AO703_RS12460 | 2695318..2696850 | - | 1533 | WP_077264263.1 | cyclic diguanylate phosphodiesterase | - |
| - | 2697188..2697358 | + | 171 | - | - | Antitoxin |
| - | 2697194..2697296 | - | 103 | - | - | Toxin |
| AO703_RS12465 | 2697454..2697795 | - | 342 | WP_125452126.1 | YebY family protein | - |
| AO703_RS12470 | 2697807..2698676 | - | 870 | WP_062741371.1 | copper homeostasis membrane protein CopD | - |
| AO703_RS12475 | 2698679..2699053 | - | 375 | WP_062741372.1 | CopC domain-containing protein YobA | - |
| AO703_RS12480 | 2699192..2699422 | + | 231 | WP_013365944.1 | DNA polymerase III subunit theta | - |
| AO703_RS12485 | 2699522..2700229 | + | 708 | WP_013365943.1 | carbon-nitrogen hydrolase family protein | - |
| AO703_RS12490 | 2700257..2700916 | + | 660 | WP_013365942.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T57381 NZ_CP012871:c2697296-2697194 [[Enterobacter] lignolyticus]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 171 bp
>AT57381 NZ_CP012871:2697188-2697358 [[Enterobacter] lignolyticus]
ACAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACCGCGCCAGGTTTTCCAGTCCGCTACAAAAGTGG
TCAGAAAAAAA
ACAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACCGCGCCAGGTTTTCCAGTCCGCTACAAAAGTGG
TCAGAAAAAAA
