Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2718335..2718606 | Replicon | chromosome |
| Accession | NZ_CP012870 | ||
| Organism | Escherichia coli strain K-12 substr. MG1655_TMP32XR2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2718465..2718568 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2718335..2718606 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QR63_RS13270 | 2714890..2715552 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QR63_RS13275 | 2715576..2716232 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| QR63_RS13280 | 2716334..2716564 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QR63_RS13285 | 2716703..2717077 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QR63_RS13290 | 2717081..2717953 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| QR63_RS13295 | 2717966..2718307 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2718335..2718606 | - | 272 | - | - | Antitoxin |
| - | 2718465..2718568 | + | 104 | - | - | Toxin |
| QR63_RS13305 | 2718703..2719359 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QR63_RS13310 | 2719360..2719551 | - | 192 | WP_000457842.1 | YebW family protein | - |
| QR63_RS13315 | 2719656..2719892 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| QR63_RS13320 | 2720010..2721449 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T57362 NZ_CP012870:2718465-2718568 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT57362 NZ_CP012870:c2718606-2718335 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
