Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3344850..3345462 Replicon chromosome
Accession NZ_CP012832
Organism Synechocystis sp. PCC 6803 substr. GT-G

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag AOY38_RS15495 Protein ID WP_010874170.1
Coordinates 3345100..3345462 (+) Length 121 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag AOY38_RS15490 Protein ID WP_010874169.1
Coordinates 3344850..3345110 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AOY38_RS15475 3341936..3342724 - 789 WP_010874166.1 hypothetical protein -
AOY38_RS15480 3342770..3343726 - 957 WP_010874167.1 quinolinate synthase NadA -
AOY38_RS15485 3343819..3344565 - 747 WP_010874168.1 cytochrome c biogenesis protein CcdA -
AOY38_RS15490 3344850..3345110 + 261 WP_010874169.1 hypothetical protein Antitoxin
AOY38_RS15495 3345100..3345462 + 363 WP_010874170.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
AOY38_RS15500 3345599..3348205 + 2607 WP_010874171.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase -
AOY38_RS15505 3348435..3349262 + 828 WP_010874172.1 hypothetical protein -
AOY38_RS15510 3349591..3350112 + 522 WP_010874173.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-2

(37-110)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 121 a.a.        Molecular weight: 13679.59 Da        Isoelectric Point: 8.2767

>T57273 WP_010874170.1 NZ_CP012832:3345100-3345462 [Synechocystis sp. PCC 6803]
MSNNLHLVNIDFTPEYRRSLKYLAKKYRNIRSDVQPIIEALQKGVISGDRLAGFGSDIYVYKLRIKNSNIQKGKSSGYRL
IYLLESENSILLLTIYSKAEQEDIAASDINSILGEYSIED

Download         Length: 363 bp

>T57273 NZ_CP012832:3345100-3345462 [Synechocystis sp. PCC 6803]
ATGTCGAATAATCTCCATTTAGTCAATATCGACTTCACCCCCGAATATAGGAGAAGTTTAAAATATTTAGCCAAGAAATA
TCGAAATATTCGTTCTGATGTTCAGCCCATTATTGAGGCTTTGCAAAAAGGCGTCATTAGTGGTGATCGCCTGGCAGGGT
TTGGCTCTGATATTTACGTCTATAAGCTTAGAATTAAGAATAGTAATATTCAGAAAGGGAAAAGTTCTGGCTACCGATTA
ATTTATTTACTCGAATCAGAAAACAGTATTTTGTTGTTAACCATTTACAGTAAAGCTGAACAAGAAGATATTGCCGCTAG
TGACATTAATTCAATTTTAGGGGAGTACTCCATAGAAGACTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9909.29 Da        Isoelectric Point: 4.3705

>AT57273 WP_010874169.1 NZ_CP012832:3344850-3345110 [Synechocystis sp. PCC 6803]
MMRAFEVMATVKDSKQLLLDSDLHWNTSRVKVIILESDELASKGSEFDPDDTPVEEIKVSLRKALEEYKQGKRIPVENMW
EGIDVE

Download         Length: 261 bp

>AT57273 NZ_CP012832:3344850-3345110 [Synechocystis sp. PCC 6803]
ATGATGAGAGCTTTTGAGGTAATGGCCACAGTTAAAGATTCCAAACAATTGCTCTTGGATAGTGATTTGCATTGGAATAC
CAGCCGAGTCAAGGTGATTATTTTGGAATCAGATGAATTGGCATCAAAAGGAAGTGAGTTTGATCCTGATGACACGCCTG
TCGAAGAAATTAAGGTGAGTTTGAGGAAGGCATTAGAGGAATATAAACAAGGAAAAAGAATTCCAGTAGAAAATATGTGG
GAGGGAATTGATGTCGAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References