Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1934876..1935021 | Replicon | chromosome |
| Accession | NZ_CP012744 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain TGH10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1934912..1935014 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1934876..1935021 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOG31_RS09730 | 1930006..1932066 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AOG31_RS09735 | 1932070..1932729 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| AOG31_RS09740 | 1932808..1933038 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AOG31_RS09745 | 1933151..1933525 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AOG31_RS09750 | 1933529..1934398 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| AOG31_RS09755 | 1934415..1934753 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1934876..1935021 | - | 146 | - | - | Antitoxin |
| - | 1934912..1935014 | + | 103 | - | - | Toxin |
| AOG31_RS29135 | 1935389..1935532 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AOG31_RS09765 | 1935637..1936605 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AOG31_RS09770 | 1936762..1937415 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| AOG31_RS09775 | 1937412..1937603 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AOG31_RS09780 | 1937701..1937940 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AOG31_RS09785 | 1938056..1939489 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T57136 NZ_CP012744:1934912-1935014 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT57136 NZ_CP012744:c1935021-1934876 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
