Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1358114..1358254 | Replicon | chromosome |
| Accession | NZ_CP012685 | ||
| Organism | Serratia marcescens strain SmUNAM836 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1358158..1358254 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1358114..1358254 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABH11_RS06530 | 1353316..1353741 | + | 426 | WP_033638066.1 | RNA polymerase-binding protein DksA | - |
| ABH11_RS06535 | 1353934..1354887 | + | 954 | WP_033646426.1 | prolyl aminopeptidase | - |
| ABH11_RS06540 | 1354919..1355149 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| ABH11_RS06545 | 1355495..1356013 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| ABH11_RS06550 | 1356338..1356721 | + | 384 | WP_004940886.1 | CopC domain-containing protein YobA | - |
| ABH11_RS06555 | 1356724..1357605 | + | 882 | WP_060706450.1 | copper homeostasis membrane protein CopD | - |
| ABH11_RS06560 | 1357675..1358016 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 1358114..1358254 | - | 141 | - | - | Antitoxin |
| - | 1358158..1358254 | + | 97 | - | - | Toxin |
| ABH11_RS06565 | 1358496..1358900 | + | 405 | WP_060706451.1 | hypothetical protein | - |
| ABH11_RS06570 | 1358897..1359115 | - | 219 | WP_060706452.1 | hypothetical protein | - |
| ABH11_RS06575 | 1359159..1359353 | - | 195 | WP_060706453.1 | hypothetical protein | - |
| ABH11_RS06580 | 1359646..1359996 | + | 351 | WP_033638116.1 | DUF4377 domain-containing protein | - |
| ABH11_RS06585 | 1360180..1361379 | + | 1200 | WP_033638117.1 | trans-2-enoyl-CoA reductase family protein | - |
| ABH11_RS24665 | 1361607..1361825 | + | 219 | WP_033646423.1 | hypothetical protein | - |
| ABH11_RS06590 | 1361997..1362302 | + | 306 | WP_033646422.1 | hypothetical protein | - |
| ABH11_RS06595 | 1362346..1362681 | + | 336 | WP_033638120.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T56959 NZ_CP012685:1358158-1358254 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT56959 NZ_CP012685:c1358254-1358114 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
