Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2150409..2150677 | Replicon | chromosome |
| Accession | NZ_CP012635 | ||
| Organism | Escherichia coli strain SF-088 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2150537..2150639 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2150409..2150677 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AN203_RS10580 | 2146963..2147625 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AN203_RS10585 | 2147648..2148304 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| AN203_RS10590 | 2148406..2148636 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AN203_RS10595 | 2148775..2149149 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AN203_RS10600 | 2149153..2150025 | + | 873 | WP_000879319.1 | copper homeostasis membrane protein CopD | - |
| AN203_RS10605 | 2150038..2150379 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2150409..2150677 | - | 269 | - | - | Antitoxin |
| - | 2150537..2150639 | + | 103 | - | - | Toxin |
| AN203_RS10615 | 2150774..2151430 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| AN203_RS10620 | 2151431..2151622 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AN203_RS10625 | 2151727..2151963 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AN203_RS10630 | 2152081..2153520 | - | 1440 | WP_024188929.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T56879 NZ_CP012635:2150537-2150639 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT56879 NZ_CP012635:c2150677-2150409 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
