Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2203307..2203575 | Replicon | chromosome |
| Accession | NZ_CP012633 | ||
| Organism | Escherichia coli strain SF-166 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2203435..2203537 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2203307..2203575 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AN204_RS10640 | 2199861..2200523 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| AN204_RS10645 | 2200546..2201202 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| AN204_RS10650 | 2201304..2201534 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AN204_RS10655 | 2201673..2202047 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AN204_RS10660 | 2202051..2202923 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| AN204_RS10665 | 2202936..2203277 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2203307..2203575 | - | 269 | - | - | Antitoxin |
| - | 2203435..2203537 | + | 103 | - | - | Toxin |
| AN204_RS10675 | 2203672..2204328 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| AN204_RS10680 | 2204329..2204520 | - | 192 | WP_001296140.1 | YebW family protein | - |
| AN204_RS10685 | 2204625..2204861 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AN204_RS10690 | 2204979..2206418 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T56852 NZ_CP012633:2203435-2203537 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT56852 NZ_CP012633:c2203575-2203307 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
