Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2205838..2205983 | Replicon | chromosome |
| Accession | NZ_CP012568 | ||
| Organism | Klebsiella pneumoniae strain UCLAOXA232KP | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2205845..2205947 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2205838..2205983 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM278_RS11755 | 2201369..2202802 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM278_RS11760 | 2202918..2203157 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM278_RS11765 | 2203255..2203446 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM278_RS11770 | 2203443..2204096 | - | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| AM278_RS11775 | 2204253..2205221 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM278_RS31035 | 2205326..2205469 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2205838..2205983 | + | 146 | - | - | Antitoxin |
| - | 2205845..2205947 | - | 103 | - | - | Toxin |
| AM278_RS11790 | 2206106..2206444 | - | 339 | WP_009307539.1 | YebY family protein | - |
| AM278_RS11795 | 2206461..2207330 | - | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| AM278_RS11800 | 2207334..2207708 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM278_RS11805 | 2207821..2208051 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM278_RS11810 | 2208130..2208789 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM278_RS11815 | 2208793..2210853 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T56683 NZ_CP012568:c2205947-2205845 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT56683 NZ_CP012568:2205838-2205983 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
