Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2824700..2824845 | Replicon | chromosome |
| Accession | NZ_CP012561 | ||
| Organism | Klebsiella pneumoniae strain UCLAOXA232KP | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2824736..2824838 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2824700..2824845 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM277_RS14305 | 2819830..2821890 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| AM277_RS14310 | 2821894..2822553 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM277_RS14315 | 2822632..2822862 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM277_RS14320 | 2822975..2823349 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| AM277_RS14325 | 2823353..2824222 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| AM277_RS14330 | 2824239..2824577 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 2824700..2824845 | - | 146 | - | - | Antitoxin |
| - | 2824736..2824838 | + | 103 | - | - | Toxin |
| AM277_RS31720 | 2825214..2825357 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| AM277_RS14345 | 2825462..2826430 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| AM277_RS14350 | 2826587..2827240 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| AM277_RS14355 | 2827237..2827428 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AM277_RS14360 | 2827526..2827765 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AM277_RS14365 | 2827881..2829314 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T56666 NZ_CP012561:2824736-2824838 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT56666 NZ_CP012561:c2824845-2824700 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
