Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5029285..5029428 | Replicon | chromosome |
| Accession | NZ_CP012554 | ||
| Organism | Citrobacter portucalensis strain P10159 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5029320..5029423 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5029285..5029428 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P10159_RS23720 | 5024441..5025343 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| P10159_RS23730 | 5025661..5025852 | - | 192 | WP_008322661.1 | hypothetical protein | - |
| P10159_RS23735 | 5026345..5026935 | - | 591 | WP_032939142.1 | hypothetical protein | - |
| P10159_RS23745 | 5027556..5027929 | + | 374 | Protein_4716 | CopC domain-containing protein YobA | - |
| P10159_RS23750 | 5027933..5028805 | + | 873 | WP_060683694.1 | copper homeostasis membrane protein CopD | - |
| P10159_RS23755 | 5028826..5029164 | + | 339 | WP_032943770.1 | YebY family protein | - |
| - | 5029285..5029428 | - | 144 | - | - | Antitoxin |
| - | 5029320..5029423 | + | 104 | - | - | Toxin |
| P10159_RS23760 | 5029500..5030585 | - | 1086 | WP_060683695.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| P10159_RS25545 | 5030554..5030826 | - | 273 | WP_071845316.1 | excisionase | - |
| P10159_RS23765 | 5030891..5031133 | - | 243 | WP_003841647.1 | DUF4060 family protein | - |
| P10159_RS23775 | 5031316..5031660 | - | 345 | WP_060683697.1 | hypothetical protein | - |
| P10159_RS23780 | 5031695..5032807 | - | 1113 | WP_060683698.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56634 NZ_CP012554:5029320-5029423 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT56634 NZ_CP012554:c5029428-5029285 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
