Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 881777..882353 Replicon chromosome
Accession NZ_CP012547
Organism Campylobacter pinnipediorum subsp. pinnipediorum strain RM17261

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag CPIN17261_RS04425 Protein ID WP_078387706.1
Coordinates 881777..882076 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CPIN17261_RS04430 Protein ID WP_078387707.1
Coordinates 882069..882353 (+) Length 95 a.a.

Genomic Context

CPIN17261_RS04385CPIN17261_RS04390CPIN17261_RS04395CPIN17261_RS04400CPIN17261_RS04405CPIN17261_RS04410CPIN17261_RS04415CPIN17261_RS04425CPIN17261_RS04430CPIN17261_RS04450CPIN17261_RS04420CPIN17261_RS04435CPIN17261_RS04445CPIN17261_RS04455CPIN17261_RS04460CPIN17261_RS04465CPIN17261_RS04470
Location: 876860..877201 (342 bp)
Type: Others
Protein ID: WP_078387698.1
Location: 877203..877508 (306 bp)
Type: Others
Protein ID: WP_194284709.1
Location: 877546..878748 (1203 bp)
Type: Others
Protein ID: WP_078387700.1
Location: 878738..878923 (186 bp)
Type: Others
Protein ID: WP_078387701.1
Location: 878913..879443 (531 bp)
Type: Others
Protein ID: WP_078387702.1
Location: 879454..879678 (225 bp)
Type: Others
Protein ID: WP_078387703.1
Location: 879669..881372 (1704 bp)
Type: Others
Protein ID: WP_078387704.1
Location: 881777..882076 (300 bp)
Type: Toxin
Protein ID: WP_078387706.1
Location: 882069..882353 (285 bp)
Type: Antitoxin
Protein ID: WP_078387707.1
Location: 884859..885041 (183 bp)
Type: Others
Protein ID: WP_078387711.1
Location: 881460..881669 (210 bp)
Type: Others
Protein ID: WP_078387705.1
Location: 882356..883357 (1002 bp)
Type: Others
Protein ID: WP_153300937.1
Location: 883700..884782 (1083 bp)
Type: Others
Protein ID: WP_078387710.1
Location: 885146..885409 (264 bp)
Type: Others
Protein ID: WP_078387712.1
Location: 885480..885974 (495 bp)
Type: Others
Protein ID: WP_078387713.1
Location: 885979..886227 (249 bp)
Type: Others
Protein ID: WP_078387714.1
Location: 886230..886466 (237 bp)
Type: Others
Protein ID: WP_078387715.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CPIN17261_RS04385876860..877201+342WP_078387698.1hypothetical protein-
CPIN17261_RS04390877203..877508+306WP_194284709.1hypothetical protein-
CPIN17261_RS04395877546..878748+1203WP_078387700.1hypothetical protein-
CPIN17261_RS04400878738..878923+186WP_078387701.1hypothetical protein-
CPIN17261_RS04405878913..879443+531WP_078387702.1hypothetical protein-
CPIN17261_RS04410879454..879678+225WP_078387703.1hypothetical protein-
CPIN17261_RS04415879669..881372+1704WP_078387704.1AAA family ATPase-
CPIN17261_RS04420881460..881669-210WP_078387705.1hypothetical protein-
CPIN17261_RS04425881777..882076+300WP_078387706.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CPIN17261_RS04430882069..882353+285WP_078387707.1putative addiction module antidote proteinAntitoxin
CPIN17261_RS04435882356..883357-1002WP_153300937.1hypothetical protein-
CPIN17261_RS04445883700..884782-1083WP_078387710.1phage tail tape measure protein-
CPIN17261_RS04450884859..885041+183WP_078387711.1hypothetical protein-
CPIN17261_RS04455885146..885409-264WP_078387712.1hypothetical protein-
CPIN17261_RS04460885480..885974-495WP_078387713.1phage major tail tube protein-
CPIN17261_RS04465885979..886227-249WP_078387714.1hypothetical protein-
CPIN17261_RS04470886230..886466-237WP_078387715.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideProphage--863364..91354250178


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(21-93)

Antitoxin

Uncharacterized protein HI1420

(3-93)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11373.05 Da        Isoelectric Point: 9.6254

>T56619 WP_078387706.1 NZ_CP012547:881777-882076 [Campylobacter pinnipediorum subsp. pinnipediorum]
MYTIKQTDYFSKWIIKLKDIKGKVSILRRVERIKDGNFGDCKSVGNNISELRITTGPGYRVYYTNKNDEIIILLVGGDKS
TQSNDIKKANEILKDLENE

Download         Length: 300 bp

>T56619 NZ_CP012547:881777-882076 [Campylobacter pinnipediorum subsp. pinnipediorum]
ATGTATACAATAAAACAAACTGATTACTTTTCAAAATGGATAATAAAGCTTAAAGACATAAAGGGTAAAGTTTCAATTTT
GCGAAGAGTTGAAAGAATAAAAGACGGCAATTTTGGAGATTGTAAATCAGTTGGTAACAATATAAGCGAACTAAGAATTA
CAACTGGTCCAGGATATAGAGTTTATTACACAAATAAAAACGATGAGATTATTATTTTATTAGTTGGCGGGGATAAATCA
ACTCAAAGTAATGATATTAAAAAAGCAAATGAAATTTTAAAGGATTTAGAAAATGAGTAA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10394.93 Da        Isoelectric Point: 5.0477

>AT56619 WP_078387707.1 NZ_CP012547:882069-882353 [Campylobacter pinnipediorum subsp. pinnipediorum]
MSKTQITDFDISQYLDNQEVIAEYISQILADGDMDELLDALGNIAKAKGMSQIAKDTGLGRESLYKTFHKGSKPKFDTIM
KLISSFGLKMQVSA

Download         Length: 285 bp

>AT56619 NZ_CP012547:882069-882353 [Campylobacter pinnipediorum subsp. pinnipediorum]
ATGAGTAAAACACAAATAACGGATTTTGATATATCTCAGTATTTAGACAATCAAGAAGTCATAGCAGAATATATATCTCA
AATCTTAGCCGATGGTGATATGGATGAGCTACTAGATGCGCTTGGCAATATAGCAAAAGCCAAAGGCATGAGCCAAATAG
CAAAAGACACAGGGCTGGGCAGAGAAAGTTTATATAAAACCTTTCACAAAGGAAGTAAGCCAAAGTTTGATACTATAATG
AAACTTATATCTTCTTTTGGTTTAAAAATGCAAGTTAGCGCATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References