Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4877563..4877708 | Replicon | chromosome |
| Accession | NZ_CP012426 | ||
| Organism | Klebsiella pneumoniae strain KP5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4877599..4877701 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4877563..4877708 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACG94_RS24440 | 4872693..4874753 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| ACG94_RS24445 | 4874757..4875416 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ACG94_RS24450 | 4875495..4875725 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ACG94_RS24455 | 4875838..4876212 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| ACG94_RS24460 | 4876216..4877085 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| ACG94_RS24465 | 4877102..4877440 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4877563..4877708 | - | 146 | - | - | Antitoxin |
| - | 4877599..4877701 | + | 103 | - | - | Toxin |
| ACG94_RS30420 | 4878077..4878220 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| ACG94_RS24475 | 4878325..4879293 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| ACG94_RS24480 | 4879450..4880103 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| ACG94_RS24485 | 4880100..4880291 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ACG94_RS24490 | 4880389..4880628 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ACG94_RS24495 | 4880744..4882177 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T56467 NZ_CP012426:4877599-4877701 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT56467 NZ_CP012426:c4877708-4877563 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
