Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1999321..1999592 | Replicon | chromosome |
| Accession | NZ_CP012380 | ||
| Organism | Escherichia coli strain WAT | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1999359..1999462 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1999321..1999592 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKO64_RS10360 | 1996478..1997917 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AKO64_RS10365 | 1998035..1998271 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AKO64_RS10370 | 1998376..1998567 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AKO64_RS10375 | 1998568..1999224 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1999321..1999592 | + | 272 | - | - | Antitoxin |
| - | 1999359..1999462 | - | 104 | - | - | Toxin |
| AKO64_RS10380 | 1999620..1999961 | - | 342 | WP_000976472.1 | YebY family protein | - |
| AKO64_RS10385 | 1999974..2000846 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| AKO64_RS10390 | 2000850..2001224 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AKO64_RS10395 | 2001363..2001593 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AKO64_RS10400 | 2001695..2002351 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| AKO64_RS10405 | 2002375..2003037 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56395 NZ_CP012380:c1999462-1999359 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT56395 NZ_CP012380:1999321-1999592 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
