Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1890998..1891266 | Replicon | chromosome |
| Accession | NZ_CP012379 | ||
| Organism | Escherichia coli strain PAR | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1891036..1891138 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1890998..1891266 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKO63_RS09840 | 1888154..1889593 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AKO63_RS09845 | 1889712..1889948 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AKO63_RS09850 | 1890053..1890244 | + | 192 | WP_024186842.1 | YebW family protein | - |
| AKO63_RS09855 | 1890245..1890901 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 1890998..1891266 | + | 269 | - | - | Antitoxin |
| - | 1891036..1891138 | - | 103 | - | - | Toxin |
| AKO63_RS09860 | 1891296..1891637 | - | 342 | WP_000984819.1 | YebY family protein | - |
| AKO63_RS09865 | 1891650..1892522 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| AKO63_RS09870 | 1892526..1892900 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| AKO63_RS09875 | 1893039..1893269 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AKO63_RS09880 | 1893371..1894027 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| AKO63_RS09885 | 1894051..1894713 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T56367 NZ_CP012379:c1891138-1891036 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT56367 NZ_CP012379:1890998-1891266 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
