Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2008428..2008699 | Replicon | chromosome |
| Accession | NZ_CP012376 | ||
| Organism | Escherichia coli strain GE3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2008466..2008569 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2008428..2008699 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKN41_RS09760 | 2005585..2007024 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AKN41_RS09765 | 2007142..2007378 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AKN41_RS09770 | 2007483..2007674 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AKN41_RS09775 | 2007675..2008331 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2008428..2008699 | + | 272 | - | - | Antitoxin |
| - | 2008466..2008569 | - | 104 | - | - | Toxin |
| AKN41_RS09780 | 2008727..2009068 | - | 342 | WP_000976492.1 | YebY family protein | - |
| AKN41_RS09785 | 2009081..2009953 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| AKN41_RS09790 | 2009957..2010331 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AKN41_RS09795 | 2010470..2010700 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AKN41_RS09800 | 2010802..2011458 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| AKN41_RS09805 | 2011482..2012144 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56337 NZ_CP012376:c2008569-2008466 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT56337 NZ_CP012376:2008428-2008699 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
