Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1868930..1869077 | Replicon | chromosome |
| Accession | NZ_CP012300 | ||
| Organism | Klebsiella quasipneumoniae strain HKUOPLC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1868971..1869073 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1868930..1869077 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AKK42_RS09020 | 1864065..1866125 | + | 2061 | WP_053810191.1 | oligopeptidase B | - |
| AKK42_RS09025 | 1866129..1866788 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| AKK42_RS09030 | 1866867..1867097 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AKK42_RS09035 | 1867210..1867584 | + | 375 | WP_053810192.1 | CopC domain-containing protein YobA | - |
| AKK42_RS09040 | 1867588..1868457 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| AKK42_RS09045 | 1868474..1868812 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1868930..1869077 | - | 148 | - | - | Antitoxin |
| - | 1868971..1869073 | + | 103 | - | - | Toxin |
| AKK42_RS26660 | 1869461..1869604 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| AKK42_RS09055 | 1869708..1870676 | - | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| AKK42_RS09060 | 1870833..1871486 | + | 654 | WP_053810193.1 | protein-serine/threonine phosphatase | - |
| AKK42_RS09065 | 1871483..1871674 | - | 192 | WP_002911395.1 | YebW family protein | - |
| AKK42_RS09070 | 1871772..1872011 | - | 240 | WP_002911393.1 | YebV family protein | - |
| AKK42_RS09075 | 1872128..1873561 | - | 1434 | WP_053810194.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T56243 NZ_CP012300:1868971-1869073 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT56243 NZ_CP012300:c1869077-1868930 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
