Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1449095..1449250 | Replicon | chromosome |
| Accession | NZ_CP012268 | ||
| Organism | Cronobacter muytjensii ATCC 51329 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1449130..1449233 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1449095..1449250 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFK63_RS06710 | 1444216..1446279 | + | 2064 | WP_038862390.1 | oligopeptidase B | - |
| AFK63_RS06715 | 1446276..1446938 | - | 663 | WP_038862391.1 | exodeoxyribonuclease X | - |
| AFK63_RS06720 | 1447015..1447245 | - | 231 | WP_007734209.1 | DNA polymerase III subunit theta | - |
| AFK63_RS06725 | 1447392..1447766 | + | 375 | WP_038862392.1 | CopC domain-containing protein YobA | - |
| AFK63_RS06730 | 1447771..1448640 | + | 870 | WP_038862393.1 | copper homeostasis membrane protein CopD | - |
| AFK63_RS06735 | 1448655..1448993 | + | 339 | WP_038862394.1 | YebY family protein | - |
| - | 1449095..1449250 | - | 156 | - | - | Antitoxin |
| - | 1449130..1449233 | + | 104 | - | - | Toxin |
| AFK63_RS06740 | 1449970..1450614 | + | 645 | WP_038862396.1 | metallophosphoesterase | - |
| AFK63_RS06745 | 1450615..1450806 | - | 192 | WP_038862398.1 | YebW family protein | - |
| AFK63_RS06750 | 1450917..1451156 | - | 240 | WP_007698851.1 | YebV family protein | - |
| AFK63_RS06755 | 1451267..1452709 | - | 1443 | WP_038862399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | flhD / flhC / motA / motB / cheA / cheW / cheR / cheB / cheY / cheZ / flhB / flhA / kdsA | 1319802..1559402 | 239600 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56212 NZ_CP012268:1449130-1449233 [Cronobacter muytjensii ATCC 51329]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 156 bp
>AT56212 NZ_CP012268:c1449250-1449095 [Cronobacter muytjensii ATCC 51329]
CTGCCTTTTCTCAGGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGT
GCGCTAAAAGTTGGCATTAATGCAGGCTCAGTCGCCTTGCCATTTAAGAATAGATGACGACAGCAGCTTTTCCAGT
CTGCCTTTTCTCAGGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGT
GCGCTAAAAGTTGGCATTAATGCAGGCTCAGTCGCCTTGCCATTTAAGAATAGATGACGACAGCAGCTTTTCCAGT
