Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2666508..2666648 | Replicon | chromosome |
| Accession | NZ_CP012266 | ||
| Organism | Cronobacter dublinensis subsp. dublinensis LMG 23823 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2666510..2666613 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2666508..2666648 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFK67_RS12145 | 2662179..2662931 | + | 753 | WP_007734232.1 | hypothetical protein | - |
| AFK67_RS12150 | 2662936..2663595 | + | 660 | Protein_2419 | DNA methyltransferase | - |
| AFK67_RS12155 | 2663592..2663810 | + | 219 | WP_032967691.1 | hypothetical protein | - |
| AFK67_RS22875 | 2664369..2664563 | - | 195 | WP_134792954.1 | hypothetical protein | - |
| AFK67_RS12165 | 2665106..2665378 | + | 273 | WP_032967689.1 | excisionase | - |
| AFK67_RS12170 | 2665347..2666432 | + | 1086 | WP_038883315.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2666508..2666648 | + | 141 | - | - | Antitoxin |
| - | 2666510..2666613 | - | 104 | - | - | Toxin |
| AFK67_RS12175 | 2666752..2667090 | - | 339 | WP_007698868.1 | YebY family protein | - |
| AFK67_RS12180 | 2667105..2667974 | - | 870 | WP_032967688.1 | copper homeostasis membrane protein CopD | - |
| AFK67_RS12185 | 2667979..2668353 | - | 375 | WP_007734211.1 | CopC domain-containing protein YobA | - |
| AFK67_RS12190 | 2668500..2668730 | + | 231 | WP_007734209.1 | DNA polymerase III subunit theta | - |
| AFK67_RS12195 | 2668806..2669468 | + | 663 | WP_007734207.1 | exodeoxyribonuclease X | - |
| AFK67_RS12200 | 2669465..2671528 | - | 2064 | WP_032967687.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2619762..2687941 | 68179 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56197 NZ_CP012266:c2666613-2666510 [Cronobacter dublinensis subsp. dublinensis LMG 23823]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT56197 NZ_CP012266:2666508-2666648 [Cronobacter dublinensis subsp. dublinensis LMG 23823]
ATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTCGCCTTGCCATTTAAGAATAGATGACGACAGCAGCTTTTCCAGT
ATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTCGCCTTGCCATTTAAGAATAGATGACGACAGCAGCTTTTCCAGT
