Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2528627..2528795 | Replicon | chromosome |
| Accession | NZ_CP012264 | ||
| Organism | Cronobacter condimenti 1330 strain LMG 26250 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2528630..2528733 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2528627..2528795 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFK62_RS11465 | 2525139..2526581 | + | 1443 | WP_053531918.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AFK62_RS11470 | 2526692..2526931 | + | 240 | WP_007668501.1 | YebV family protein | - |
| AFK62_RS11475 | 2527042..2527233 | + | 192 | WP_007668500.1 | YebW family protein | - |
| AFK62_RS11480 | 2527234..2527878 | - | 645 | WP_007668498.1 | metallophosphoesterase | - |
| - | 2528627..2528795 | + | 169 | - | - | Antitoxin |
| - | 2528630..2528733 | - | 104 | - | - | Toxin |
| AFK62_RS11485 | 2528871..2529209 | - | 339 | WP_007668494.1 | YebY family protein | - |
| AFK62_RS11490 | 2529224..2530093 | - | 870 | WP_007668491.1 | copper homeostasis membrane protein CopD | - |
| AFK62_RS11495 | 2530098..2530472 | - | 375 | WP_007668488.1 | CopC domain-containing protein YobA | - |
| AFK62_RS11500 | 2530619..2530849 | + | 231 | WP_007668481.1 | DNA polymerase III subunit theta | - |
| AFK62_RS11505 | 2530922..2531584 | + | 663 | WP_007668479.1 | exodeoxyribonuclease X | - |
| AFK62_RS11510 | 2531581..2533644 | - | 2064 | WP_032984162.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56182 NZ_CP012264:c2528733-2528630 [Cronobacter condimenti 1330]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT56182 NZ_CP012264:2528627-2528795 [Cronobacter condimenti 1330]
GACAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACAGCAGCTTTTCCAGTCCGCGCCAAAACTCGCGG
TAAAAAGCG
GACAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACAGCAGCTTTTCCAGTCCGCGCCAAAACTCGCGG
TAAAAAGCG
