Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2569479..2569647 | Replicon | chromosome |
| Accession | NZ_CP012257 | ||
| Organism | Cronobacter universalis NCTC 9529 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2569482..2569585 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2569479..2569647 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFK65_RS11825 | 2566007..2567449 | + | 1443 | WP_007698848.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AFK65_RS11830 | 2567562..2567801 | + | 240 | WP_007698851.1 | YebV family protein | - |
| AFK65_RS11835 | 2567926..2568117 | + | 192 | WP_007698854.1 | YebW family protein | - |
| AFK65_RS11840 | 2568118..2568753 | - | 636 | WP_038856929.1 | metallophosphoesterase | - |
| - | 2569479..2569647 | + | 169 | - | - | Antitoxin |
| - | 2569482..2569585 | - | 104 | - | - | Toxin |
| AFK65_RS11845 | 2569724..2570062 | - | 339 | WP_007698868.1 | YebY family protein | - |
| AFK65_RS11850 | 2570077..2570946 | - | 870 | WP_038856927.1 | copper homeostasis membrane protein CopD | - |
| AFK65_RS11855 | 2570951..2571325 | - | 375 | WP_038856926.1 | CopC domain-containing protein YobA | - |
| AFK65_RS11860 | 2571472..2571702 | + | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| AFK65_RS11865 | 2571772..2572434 | + | 663 | WP_007698885.1 | exodeoxyribonuclease X | - |
| AFK65_RS11870 | 2572431..2574494 | - | 2064 | WP_007698888.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56163 NZ_CP012257:c2569585-2569482 [Cronobacter universalis NCTC 9529]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT56163 NZ_CP012257:2569479-2569647 [Cronobacter universalis NCTC 9529]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTCTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGACCAAACTCGCAA
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTCTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGACCAAACTCGCAA
CAAAAAGCG
