Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1455839..1456007 | Replicon | chromosome |
| Accession | NZ_CP012253 | ||
| Organism | Cronobacter sakazakii strain NCTC 8155 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1455901..1456004 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1455839..1456007 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFK64_RS06895 | 1450989..1453052 | + | 2064 | WP_004386663.1 | oligopeptidase B | - |
| AFK64_RS06900 | 1453049..1453711 | - | 663 | WP_004386664.1 | exodeoxyribonuclease X | - |
| AFK64_RS06905 | 1453784..1454014 | - | 231 | WP_004386666.1 | DNA polymerase III subunit theta | - |
| AFK64_RS06910 | 1454161..1454535 | + | 375 | WP_004386667.1 | CopC domain-containing protein YobA | - |
| AFK64_RS06915 | 1454540..1455409 | + | 870 | WP_015386606.1 | copper homeostasis membrane protein CopD | - |
| AFK64_RS06920 | 1455424..1455762 | + | 339 | WP_004386669.1 | YebY family protein | - |
| - | 1455839..1456007 | - | 169 | - | - | Antitoxin |
| - | 1455901..1456004 | + | 104 | - | - | Toxin |
| AFK64_RS23080 | 1456463..1456792 | + | 330 | WP_012124471.1 | hypothetical protein | - |
| AFK64_RS06930 | 1456746..1457081 | + | 336 | WP_004386671.1 | hypothetical protein | - |
| AFK64_RS06935 | 1457878..1458522 | + | 645 | WP_004386674.1 | metallophosphoesterase | - |
| AFK64_RS06940 | 1458523..1458714 | - | 192 | WP_004386675.1 | YebW family protein | - |
| AFK64_RS06945 | 1458839..1459078 | - | 240 | WP_004386676.1 | YebV family protein | - |
| AFK64_RS06950 | 1459190..1460632 | - | 1443 | WP_029464240.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56146 NZ_CP012253:1455901-1456004 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT56146 NZ_CP012253:c1456007-1455839 [Cronobacter sakazakii]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
