Detailed information of TA system TA056097

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-AbrB
• Location: 1286426..1287072
• Replicon: chromosome
• Accession: NZ_CP012174
• Organism: Metallosphaera sedula strain ARS120-1

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: A0A088E7Y6
• Locus tag: MsedC_RS06605
• Protein ID: WP_012021252.1
• Coordinates: 1286426..1286815 (-)
• Length: 130 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: MsedC_RS06610
• Protein ID: WP_012021253.1
• Coordinates: 1286812..1287072 (-)
• Length: 87 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
MsedC_RS06585 (MsedC_1321)	1282162..1283343	+	1182	WP_012021248.1	mandelate racemase/muconate lactonizing enzyme family protein	-
MsedC_RS06590 (MsedC_1322)	1283412..1284035	-	624	WP_012021249.1	PIG-L family deacetylase	-
MsedC_RS06595 (MsedC_1323)	1284070..1285113	-	1044	WP_012021250.1	HoxN/HupN/NixA family nickel/cobalt transporter	-
MsedC_RS06600 (MsedC_1324)	1285206..1286369	-	1164	WP_012021251.1	glycosyltransferase	-
MsedC_RS06605 (MsedC_1325)	1286426..1286815	-	390	WP_012021252.1	type II toxin-antitoxin system VapC family toxin	Toxin
MsedC_RS06610 (MsedC_1326)	1286812..1287072	-	261	WP_012021253.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Antitoxin
MsedC_RS06615 (MsedC_1327)	1287138..1287764	-	627	WP_048060318.1	type 1 glutamine amidotransferase	-
MsedC_RS06620 (MsedC_1328)	1287993..1288643	+	651	WP_012021255.1	cyclase family protein	-
MsedC_RS06625 (MsedC_1329)	1288645..1289154	+	510	WP_012021256.1	OsmC family protein	-
MsedC_RS06630 (MsedC_1330)	1289340..1290692	+	1353	WP_012021257.1	APC family permease	-
MsedC_RS06635 (MsedC_1331)	1290707..1291279	-	573	WP_012021258.1	hypothetical protein	-
MsedC_RS06640 (MsedC_1332)	1291511..1291963	+	453	WP_012021259.1	peroxiredoxin	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-121)

Antitoxin

• SpoVT-AbrB domain (7-47)

Sequences

Toxin

Protein

• Length: 130 a.a.
• Molecular weight: 15075.63 Da
• Isoelectric Point: 4.9164

>T56097 WP_012021252.1 NZ_CP012174:c1286815-1286426 [Metallosphaera sedula]
MIFLDANFLVYLNLGVDPVKSFYLRILSNESMGVDPLVLDEVIYVSRKKYGVNFGDTLRFLDELVLPYVVVFPISLREYQ
VSKELITRYSLYPSDAFHVAVMLNNSIKKILTEDSDFEKIKEIERIWIK

Nucleotide

• Length: 390 bp

>T56097 NZ_CP012174:c1286815-1286426 [Metallosphaera sedula]
TTGATATTCTTGGATGCAAACTTCTTGGTGTACCTAAACCTGGGAGTTGACCCGGTCAAGAGCTTCTACCTCAGGATACT
TTCCAATGAGAGTATGGGCGTTGACCCCCTGGTCCTAGACGAGGTGATCTACGTCTCGAGGAAGAAGTATGGCGTGAATT
TCGGCGACACATTGCGATTTCTGGACGAGCTAGTCTTACCTTACGTAGTGGTATTTCCGATCTCCCTGAGGGAGTACCAG
GTTAGCAAGGAGCTCATCACTAGGTATTCCCTCTATCCCTCAGACGCGTTTCACGTGGCAGTAATGCTCAACAACTCCAT
AAAGAAGATTCTCACCGAGGACTCCGACTTCGAGAAGATCAAGGAAATAGAGAGGATCTGGATAAAGTGA

Antitoxin

Protein

• Length: 87 a.a.
• Molecular weight: 10073.56 Da
• Isoelectric Point: 4.8329

>AT56097 WP_012021253.1 NZ_CP012174:c1287072-1286812 [Metallosphaera sedula]
MTLRVEVGKKGYMIIPKNVRDLLGINEGDFLELRVENGKIVLEKERKVDLEEVERKFEEHERRIAYARRASLGDLKGVVL
EEEFDD

Nucleotide

• Length: 261 bp

>AT56097 NZ_CP012174:c1287072-1286812 [Metallosphaera sedula]
TTGACTCTTAGGGTAGAGGTAGGAAAGAAGGGTTACATGATAATCCCCAAGAACGTCAGAGACCTGCTCGGCATCAATGA
GGGCGACTTCCTGGAACTCAGGGTAGAGAATGGCAAGATAGTCCTGGAAAAGGAAAGGAAAGTTGATCTGGAGGAGGTGG
AGAGGAAGTTTGAGGAACACGAGAGAAGGATCGCGTATGCAAGAAGGGCCAGCCTTGGAGATTTAAAGGGCGTCGTGTTG
GAGGAGGAGTTTGACGATTGA

Structures

Toxin

• AlphaFold DB: A0A088E7Y6