Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2708215..2708416 | Replicon | chromosome |
| Accession | NZ_CP012167 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain 34998 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2708220..2708323 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2708215..2708416 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LI65_RS13765 | 2703431..2703691 | - | 261 | WP_039270557.1 | hypothetical protein | - |
| LI65_RS13770 | 2703675..2703959 | - | 285 | WP_039270555.1 | phage holin family protein | - |
| LI65_RS27695 | 2704099..2704296 | - | 198 | WP_127850788.1 | hypothetical protein | - |
| LI65_RS13775 | 2704326..2704760 | - | 435 | WP_039270553.1 | hypothetical protein | - |
| LI65_RS13785 | 2706206..2706721 | - | 516 | WP_039270551.1 | hypothetical protein | - |
| LI65_RS13790 | 2706954..2707367 | - | 414 | WP_052685510.1 | hypothetical protein | - |
| LI65_RS26965 | 2707442..2708131 | + | 690 | WP_080338024.1 | tyrosine-type recombinase/integrase | - |
| - | 2708215..2708416 | + | 202 | - | - | Antitoxin |
| - | 2708220..2708323 | - | 104 | - | - | Toxin |
| LI65_RS13800 | 2708465..2708803 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LI65_RS13805 | 2708820..2709689 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| LI65_RS13810 | 2709691..2710062 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| LI65_RS13815 | 2710200..2710430 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LI65_RS13820 | 2710542..2711192 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| LI65_RS13825 | 2711217..2711879 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56078 NZ_CP012167:c2708323-2708220 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT56078 NZ_CP012167:2708215-2708416 [Enterobacter hormaechei subsp. steigerwaltii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
