Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2838118..2838317 | Replicon | chromosome |
| Accession | NZ_CP012165 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain 34978 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2838121..2838224 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2838118..2838317 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LI63_RS14980 | 2834376..2835824 | + | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LI63_RS14985 | 2835931..2836170 | + | 240 | WP_003859885.1 | YebV family protein | - |
| LI63_RS14990 | 2836205..2836849 | - | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
| LI63_RS14995 | 2837017..2837997 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| LI63_RS15000 | 2838043..2838240 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2838118..2838317 | + | 200 | - | - | Antitoxin |
| - | 2838121..2838224 | - | 104 | - | - | Toxin |
| LI63_RS15005 | 2838366..2838704 | - | 339 | WP_032609509.1 | YebY family protein | - |
| LI63_RS15010 | 2838721..2839590 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| LI63_RS15015 | 2839592..2839963 | - | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| LI63_RS15020 | 2840101..2840331 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LI63_RS15025 | 2840443..2841093 | + | 651 | WP_032609512.1 | carbon-nitrogen hydrolase family protein | - |
| LI63_RS15030 | 2841118..2841780 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56062 NZ_CP012165:c2838224-2838121 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT56062 NZ_CP012165:2838118-2838317 [Enterobacter hormaechei subsp. xiangfangensis]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
