Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) yeeUV (cbtA-cbeA)/CbtA-CbeA
Location 2060918..2061749 Replicon chromosome
Accession NZ_CP012126
Organism Escherichia coli strain DH1Ec104

Toxin (Protein)


Gene name yeeV Uniprot ID S1P968
Locus tag ADZ27_RS10320 Protein ID WP_000854814.1
Coordinates 2061375..2061749 (+) Length 125 a.a.

Antitoxin (Protein)


Gene name yeeU Uniprot ID P76364
Locus tag ADZ27_RS10315 Protein ID WP_001285584.1
Coordinates 2060918..2061286 (+) Length 123 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ADZ27_RS10300 2058585..2060117 + 1533 WP_001350525.1 hypothetical protein -
ADZ27_RS24900 2060114..2060560 + 447 WP_000187523.1 RadC family protein -
ADZ27_RS10310 2060623..2060844 + 222 WP_000692323.1 DUF987 domain-containing protein -
ADZ27_RS10315 2060918..2061286 + 369 WP_001285584.1 type IV toxin-antitoxin system toxin CbtA Antitoxin
ADZ27_RS10320 2061375..2061749 + 375 WP_000854814.1 type IV toxin-antitoxin system toxin CbtA Toxin
ADZ27_RS10325 2061746..2061940 + 195 WP_000988600.1 hypothetical protein -
ADZ27_RS25390 2061953..2062066 + 114 WP_001161660.1 DUF957 domain-containing protein -
ADZ27_RS23725 2062355..2062483 - 129 Protein_1980 transposase domain-containing protein -
ADZ27_RS10335 2062555..2062737 + 183 WP_001016348.1 hypothetical protein -
ADZ27_RS10340 2062838..2063167 - 330 WP_000450409.1 DUF496 family protein -
ADZ27_RS10345 2063339..2064397 - 1059 WP_001200891.1 FUSC family protein -
ADZ27_RS10350 2064595..2065068 - 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
ADZ27_RS10355 2065187..2066353 - 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-112)

Antitoxin

Antitoxin CbeA

(18-117)


Sequences

Toxin        


Download         Length: 125 a.a.        Molecular weight: 13898.94 Da        Isoelectric Point: 7.8522

>T55892 WP_000854814.1 NZ_CP012126:2061375-2061749 [Escherichia coli]
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK

Download         Length: 375 bp

>T55892 NZ_CP012126:2061375-2061749 [Escherichia coli]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA

Antitoxin


Download         Length: 123 a.a.        Molecular weight: 13651.52 Da        Isoelectric Point: 5.9541

>AT55892 WP_001285584.1 NZ_CP012126:2060918-2061286 [Escherichia coli]
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLSSCDYVYLAVYPTPEMKN

Download         Length: 369 bp

>AT55892 NZ_CP012126:2060918-2061286 [Escherichia coli]
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTG
TGATTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829FY50

Antitoxin

Source ID Structure
PDB 2H28
AlphaFold DB A0A1M2E8G6

References