Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | NpoTA/ParE(toxin) |
| Location | 263071..264248 | Replicon | chromosome |
| Accession | NZ_CP012111 | ||
| Organism | Acetobacter pasteurianus strain Ab3 | ||
Toxin (Protein)
| Gene name | NpoT | Uniprot ID | A0A1Y0Y1B2 |
| Locus tag | DB34_RS01175 | Protein ID | WP_050818416.1 |
| Coordinates | 263071..263373 (+) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | NpoA | Uniprot ID | A0A1Y0Y3X1 |
| Locus tag | DB34_RS01180 | Protein ID | WP_050818417.1 |
| Coordinates | 263394..264248 (+) | Length | 285 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DB34_RS01165 | 258972..260600 | - | 1629 | WP_050818414.1 | glycogen synthase GlgA | - |
| DB34_RS01170 | 260812..262932 | + | 2121 | WP_050818415.1 | glycogen debranching protein GlgX | - |
| DB34_RS01175 | 263071..263373 | + | 303 | WP_050818416.1 | hypothetical protein | Toxin |
| DB34_RS01180 | 263394..264248 | + | 855 | WP_050818417.1 | glucose 1-dehydrogenase | Antitoxin |
| DB34_RS01185 | 264329..266116 | - | 1788 | WP_050820255.1 | thiamine pyrophosphate-requiring protein | - |
| DB34_RS01190 | 266201..267661 | - | 1461 | WP_050818418.1 | FAD-dependent monooxygenase | - |
| DB34_RS01195 | 267824..268489 | + | 666 | WP_050818419.1 | SCO family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 10770.76 Da Isoelectric Point: 10.9433
>T55784 WP_050818416.1 NZ_CP012111:263071-263373 [Acetobacter pasteurianus]
MPRGDKSAYTDTQKRQAEHIEKSYEQHGVSEKEAERRAWATVNKETGGGKKSGSGRGHPVTHAPSRKGGKAGGEASAHRT
AEERSASARKAAQTRKKNST
MPRGDKSAYTDTQKRQAEHIEKSYEQHGVSEKEAERRAWATVNKETGGGKKSGSGRGHPVTHAPSRKGGKAGGEASAHRT
AEERSASARKAAQTRKKNST
Download Length: 303 bp
>T55784 NZ_CP012111:263071-263373 [Acetobacter pasteurianus]
ATGCCTCGTGGTGACAAATCTGCTTACACAGACACGCAAAAACGACAAGCTGAACATATCGAAAAAAGCTATGAGCAACA
TGGTGTCAGTGAAAAGGAAGCTGAACGCCGGGCTTGGGCTACGGTTAACAAAGAAACCGGTGGTGGCAAGAAAAGTGGAT
CAGGAAGAGGCCATCCCGTAACACATGCCCCCTCACGCAAAGGTGGCAAAGCGGGTGGAGAGGCCTCCGCCCACCGGACG
GCAGAAGAGCGCTCTGCCTCTGCACGAAAAGCCGCTCAAACTCGCAAGAAAAATTCAACATAA
ATGCCTCGTGGTGACAAATCTGCTTACACAGACACGCAAAAACGACAAGCTGAACATATCGAAAAAAGCTATGAGCAACA
TGGTGTCAGTGAAAAGGAAGCTGAACGCCGGGCTTGGGCTACGGTTAACAAAGAAACCGGTGGTGGCAAGAAAAGTGGAT
CAGGAAGAGGCCATCCCGTAACACATGCCCCCTCACGCAAAGGTGGCAAAGCGGGTGGAGAGGCCTCCGCCCACCGGACG
GCAGAAGAGCGCTCTGCCTCTGCACGAAAAGCCGCTCAAACTCGCAAGAAAAATTCAACATAA
Antitoxin
Download Length: 285 a.a. Molecular weight: 30493.66 Da Isoelectric Point: 5.6404
>AT55784 WP_050818417.1 NZ_CP012111:263394-264248 [Acetobacter pasteurianus]
MMVHEERIPPQHQAVPGETDKMNPIPDHGEESYRGSGKLSGKVALITGADSGIGRAVAIAFAREGADIAIAYYTEDKDAQ
TTAEWVEKAGRRAILLPGDIRLRSHCNDIIKRTIDAFGNLNILVNNAAHQKSIKDLSEIDEEELDTTFRTNFYGMFFLCQ
AALPYLSSGASIINTTSINAVQPSPHLPVYAATKAAISNFTAGLAQMLGEKNIRVNAVAPGPVWTPLIPSTMPQEEIAKF
GKNTPLGRPAQPAELASAYVMFASDEASYTTGAVLPVTGGRPML
MMVHEERIPPQHQAVPGETDKMNPIPDHGEESYRGSGKLSGKVALITGADSGIGRAVAIAFAREGADIAIAYYTEDKDAQ
TTAEWVEKAGRRAILLPGDIRLRSHCNDIIKRTIDAFGNLNILVNNAAHQKSIKDLSEIDEEELDTTFRTNFYGMFFLCQ
AALPYLSSGASIINTTSINAVQPSPHLPVYAATKAAISNFTAGLAQMLGEKNIRVNAVAPGPVWTPLIPSTMPQEEIAKF
GKNTPLGRPAQPAELASAYVMFASDEASYTTGAVLPVTGGRPML
Download Length: 855 bp
>AT55784 NZ_CP012111:263394-264248 [Acetobacter pasteurianus]
ATGATGGTACATGAAGAAAGAATTCCCCCTCAACATCAGGCAGTTCCTGGTGAAACAGACAAAATGAATCCTATCCCCGA
TCATGGGGAAGAAAGTTATCGAGGCTCTGGAAAGCTTTCTGGCAAAGTTGCTTTGATAACAGGAGCAGATTCTGGAATAG
GTCGAGCAGTTGCCATTGCTTTTGCACGTGAAGGTGCAGATATTGCAATTGCTTATTATACAGAAGACAAAGATGCTCAG
ACAACAGCTGAATGGGTAGAAAAAGCCGGGCGCCGCGCAATCTTACTCCCGGGAGATATTCGATTACGCTCACATTGTAA
CGATATTATAAAACGCACCATAGATGCATTCGGAAATCTCAATATTTTGGTAAACAATGCGGCTCATCAAAAATCTATTA
AAGATCTTTCCGAAATTGATGAAGAAGAGCTTGATACTACGTTCCGTACAAATTTTTACGGTATGTTTTTTCTCTGTCAG
GCAGCTTTGCCATATTTAAGCAGTGGGGCTTCGATTATTAACACAACTTCGATCAACGCTGTACAACCATCCCCGCATTT
GCCTGTCTATGCTGCCACAAAAGCAGCTATTTCCAATTTTACAGCGGGCCTTGCCCAAATGTTGGGAGAAAAAAATATTC
GTGTAAATGCTGTTGCACCTGGTCCAGTTTGGACACCACTTATTCCATCAACAATGCCGCAGGAAGAGATTGCCAAATTT
GGTAAAAACACTCCTCTTGGCCGGCCAGCACAACCAGCAGAACTCGCTTCTGCCTACGTCATGTTCGCTTCAGATGAAGC
AAGTTACACAACAGGCGCTGTTCTTCCCGTAACTGGCGGAAGACCTATGCTTTAG
ATGATGGTACATGAAGAAAGAATTCCCCCTCAACATCAGGCAGTTCCTGGTGAAACAGACAAAATGAATCCTATCCCCGA
TCATGGGGAAGAAAGTTATCGAGGCTCTGGAAAGCTTTCTGGCAAAGTTGCTTTGATAACAGGAGCAGATTCTGGAATAG
GTCGAGCAGTTGCCATTGCTTTTGCACGTGAAGGTGCAGATATTGCAATTGCTTATTATACAGAAGACAAAGATGCTCAG
ACAACAGCTGAATGGGTAGAAAAAGCCGGGCGCCGCGCAATCTTACTCCCGGGAGATATTCGATTACGCTCACATTGTAA
CGATATTATAAAACGCACCATAGATGCATTCGGAAATCTCAATATTTTGGTAAACAATGCGGCTCATCAAAAATCTATTA
AAGATCTTTCCGAAATTGATGAAGAAGAGCTTGATACTACGTTCCGTACAAATTTTTACGGTATGTTTTTTCTCTGTCAG
GCAGCTTTGCCATATTTAAGCAGTGGGGCTTCGATTATTAACACAACTTCGATCAACGCTGTACAACCATCCCCGCATTT
GCCTGTCTATGCTGCCACAAAAGCAGCTATTTCCAATTTTACAGCGGGCCTTGCCCAAATGTTGGGAGAAAAAAATATTC
GTGTAAATGCTGTTGCACCTGGTCCAGTTTGGACACCACTTATTCCATCAACAATGCCGCAGGAAGAGATTGCCAAATTT
GGTAAAAACACTCCTCTTGGCCGGCCAGCACAACCAGCAGAACTCGCTTCTGCCTACGTCATGTTCGCTTCAGATGAAGC
AAGTTACACAACAGGCGCTGTTCTTCCCGTAACTGGCGGAAGACCTATGCTTTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1Y0Y1B2 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1Y0Y3X1 |