Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 202005..202153 | Replicon | chromosome |
| Accession | NZ_CP012096 | ||
| Organism | Serratia plymuthica strain 3Rp8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 202013..202109 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 202005..202153 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ADP72_RS25655 | 197224..197337 | - | 114 | Protein_194 | IS1 family transposase | - |
| ADP72_RS00960 | 197553..199505 | + | 1953 | WP_006324744.1 | TonB-dependent receptor | - |
| ADP72_RS00965 | 199502..200866 | - | 1365 | WP_020438854.1 | HAMP domain-containing protein | - |
| ADP72_RS00970 | 200863..201612 | - | 750 | WP_037430657.1 | response regulator transcription factor | - |
| - | 202005..202153 | + | 149 | - | - | Antitoxin |
| - | 202013..202109 | - | 97 | - | - | Toxin |
| ADP72_RS00980 | 202251..202592 | - | 342 | WP_004943126.1 | YebY family protein | - |
| ADP72_RS00985 | 202662..203543 | - | 882 | WP_006324741.1 | copper homeostasis membrane protein CopD | - |
| ADP72_RS00990 | 203547..203930 | - | 384 | WP_004943122.1 | CopC domain-containing protein YobA | - |
| ADP72_RS00995 | 204236..204754 | - | 519 | WP_004943119.1 | non-heme ferritin | - |
| ADP72_RS01000 | 205129..205359 | + | 231 | WP_004943118.1 | DNA polymerase III subunit theta | - |
| ADP72_RS01005 | 205390..206343 | - | 954 | WP_006324738.1 | prolyl aminopeptidase | - |
| ADP72_RS01010 | 206512..206937 | - | 426 | WP_004943113.1 | TraR/DksA C4-type zinc finger protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T55752 NZ_CP012096:c202109-202013 [Serratia plymuthica]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT55752 NZ_CP012096:202005-202153 [Serratia plymuthica]
AACAGCATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
AACAGCATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
