Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 5243059..5243684 Replicon chromosome
Accession NZ_CP011985
Organism Klebsiella pneumoniae UHKPC07

Toxin (Protein)


Gene name vapC Uniprot ID R4Y4A3
Locus tag H224_RS26435 Protein ID WP_002882817.1
Coordinates 5243059..5243442 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag H224_RS26440 Protein ID WP_004150355.1
Coordinates 5243442..5243684 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H224_RS26420 5240425..5241327 + 903 WP_002882822.1 formate dehydrogenase subunit beta -
H224_RS26425 5241324..5241959 + 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
H224_RS26430 5241956..5242885 + 930 WP_004150358.1 formate dehydrogenase accessory protein FdhE -
H224_RS26435 5243059..5243442 - 384 WP_002882817.1 type II toxin-antitoxin system VapC family toxin Toxin
H224_RS26440 5243442..5243684 - 243 WP_004150355.1 ribbon-helix-helix domain-containing protein Antitoxin
H224_RS26445 5243889..5244806 + 918 WP_002882812.1 alpha/beta hydrolase -
H224_RS26450 5244820..5245761 - 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
H224_RS26455 5245806..5246243 - 438 WP_002882809.1 D-tyrosyl-tRNA(Tyr) deacylase -
H224_RS26460 5246240..5247100 - 861 WP_002882807.1 virulence factor BrkB family protein -
H224_RS26465 5247094..5247693 - 600 WP_004151865.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-112)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14377.62 Da        Isoelectric Point: 7.3178

>T55382 WP_002882817.1 NZ_CP011985:c5243442-5243059 [Klebsiella pneumoniae UHKPC07]
MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE

Download         Length: 384 bp

>T55382 NZ_CP011985:c5243442-5243059 [Klebsiella pneumoniae UHKPC07]
ATGACCTCCGGATCTGCGCTTTTTGATACCAATATTCTTATTGATTTATTTAGCGGGCGTCGCGAAGCCAAACAGGCGCT
GGAGGCCTGGCCACCGCAGAATGCGATCAGTCTGATTACCTGGATGGAGGTGATGGTTGGCGCTAAAAAATATCACCAGG
AGCAGCGCACGCGAATGGCGCTGAGCACCTTTAATATCATTAACATCTCACAGGATATTGCAGAGCGAAGCGTTGCGCTG
CGGCAGGAGTATAAGCTTAAGCTGCCGGATGCCATCATTCTGGCGACGGCGCAACTCCATCGTCTGGAACTAATTACGCG
GAATACGAAGGATTTTGCCGGTATTCCTGGCGTAGTCACGCCGTACGAAATCCACCCTGAATAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT55382 WP_004150355.1 NZ_CP011985:c5243684-5243442 [Klebsiella pneumoniae UHKPC07]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp

>AT55382 NZ_CP011985:c5243684-5243442 [Klebsiella pneumoniae UHKPC07]
ATGATGGCTGAAAGGGATATGGGCAGAATTCTTCTCGATTTATCAGACGATGTCATTCAACGTCTCGATGACCTCAAAGT
GCAGCGTAACATTCCGCGAGCGGAACTGTTACGTGAAGCGGTTGAACAATATCTGGAGAAACAAGATCGAGCTAAAGATA
CCATCTCCAGTGCGCTGGGTCTGTGGCAAGACTGCGAAGAAGACGGCATGGAATATCAACGTCAGCTACGCAAGGAGTGG
TAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GPK8

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References